| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_2252 |
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| Symbol | |
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| ID | 8358407 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chitinophaga pinensis DSM 2588 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013132 |
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| Strand | - |
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| Start bp | 2773600 |
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| End bp | 2776464 |
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| Gene Length | 2865 bp |
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| Protein Length | 954 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 644964438 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_003121944 |
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| Protein GI | 256421291 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3063] Tfp pilus assembly protein PilF |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 46 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCTCTTT TCAAATACAT ACTATCCGGA ACGGTACTTT GTCTTTCTTT ACAGGTACAG
GCTCAGATCT TCAGCAAGGG GAAAGATGCC GATGAACTCT ACAATGAAGC GGTAAAGGAA
ACGAAACTGA ATCATTACCA GAAAGCTATC CAGCTATCCA GAGAAGCACT GGAGAAGAGA
CCTGATTTTG TGGATCAGCA GTTACTGCTT GGCAGATTAT ACATGCTGAC AGGTAATGCG
GAACTTGCCA GAAAATATGT GAAACTGGTA CTCGCAAAAG ATCCGATGTA TAAAGATGCC
TACCTGTATG CCATCAATAT AGAACTGGGC GCCAGGAAAT ATGAAGAGGC GGAATGTTAT
GTAGATGAAG GACTCTATCA TTATCCGTCT GATAAGGAAC TCATGCTGAA AAAGCTGGGG
ATACTGGATG CTGCGGAACG CTTCTTCCAG GGAGGCGTTT ATGCCGATAA CCTGCTGGAT
AAGTATGCCG GTGATACAAG CGTACAACGT GCCTATACAG GACATTACCT GCTGGCAGGG
CATTATTATC AGCAGCGGAA CAACCAGCTC TTATCACAGG AGAACTATGA AAAAGCCCTG
ATGCTGGATC CGGATAACGA AGAAGCCAAG GCAGCTATCA ATAGTATGTA TGTGAGAAGT
GGCAGCTTCA CAAAAGCCAT TGAGCAGGTA AATGCAGCCC TTGCAATTAA TCCGGGTTCC
TATGAACTGA TGATGCGTAA ACTGGGCCTT TTACAGGATA TGCACGATTA TGCCGGCGCG
ATCGATCAGC TGCAACAGAT ATTAAAACGC TGGCCGGCCG ATGCAAAAGC ACGTAGTACG
GAAACGACAC TGCGCATGGA AGCCGCCGCC TGGTATGCTA ATACGGATCC TTTCCTGTTA
TATGCAGGTA TTGCAGAAAA GAACCCTGGC AACAGGGAAG CACTGGATAA AGTGATTGGT
ATGAGTATGT CCCGTGGCGC TTACCGGGAA GCACTGGCCT GGATTAACCG CGGATTAAAA
AACAATCCGA ATGACCAGCG ACTGTTATCA CTTAAACTGG ATGTACTGGA AAGCGATCGT
AAATTCGCAG AAGCAGCCCT TCTGGCCGAA AGATTACGTT ATAACAATGC CGGTACAGCC
GATCAGAGAA GCCGTTACTC CGCCCTTAAA ATAGCCAGCG GACGTGACTA TCTGGCACAG
CAGCAATACG ACCTGGCACT GGCTGAATTT GACAAAGCCC TGCAGACCGA TCCCCGTGAT
ACGACTGCTA TGGACCTGAT GGCCAATACC TATATCAATC AGAAAGATCA CATACACGCC
CTGGAAGTAC TGGATAAAGC ACTGGCGGTA TATCCCAATA ACAGCAGGTT CCTGCTGAAA
AAGTCAAGTG TACTGGCGGA GACGGGTCAA TATGACGAAG CCGCCGACAT AGCAGCCCAA
CTCCTGAATC AGCATCCCCA GGATGCTAAG TACAGCGCTA ACCTGGTGGA CCTTCGTCTG
ACTGCGGGCC GTAAACTGAT GCAAGCTGAA GAATACGATA TGGCAGCCGG TGAATTCAGG
GCTGTACTGG TACAATCGCC TGATAATATT GAAGCCCTGA ATTACCTGAT CAACCTGGAA
ACAGCCATAG GACAGTCAGA TAGCGCGCTG GTCTATGCCG ATCAGGGATT ACAATATTAT
CCGGATAATA AAGAGCTGTT ACTGAAAAAA GCAGGTATAC TGACCGATAT GCAACGGTAT
ACTGAAGCAA ATGCGATCTC CTACCAGCTG ATGCAACGTT ATCCGTTCAC GATTAAATAT
CGTACTGCCT ATACCGACGG ACTTATTGCC GAAGGCAATA CCTATCAGCG GAATAATGCA
CCGGATAGTG CACTGGCTTT ATACAGACAG GTATTAAATA TCAACAGAAA AGATTCTCTC
GCATTACAAT ACAGCATCAA TCTGCTGAAT GGCAAACAAT CATATGACAG CGCACTGGCG
TATGCGAATC AGGGTATCCG TTATTATCCG AACAATGAAT CGTTCATACA AAAGAGAGCA
GTTACACTGG AGAATAAAAA GATGTATGCG GAAGGAGCAT TGGCGGCAGA TTCCGTTGTA
AAACTGAATG GCAATCCTGT CAATGTGGAT TATGCCGATT ATCTGCACAG CAAAACAATG
AAAAATCAGT TTGGGATGTT CTTCCTGCAT TCCAGCTATG ACTACCAGGA TACAAAGTAT
AATATCGCTA CCCTTGAATA CCGTCATTTC TTCAAACGCG GTTCTTATGC AGCCCGGCTT
AACTATGCGG GCCGTCAACA GGGAACGGGA TTACAGGGAG AAGCAGAATT GTATTATACG
CATAATCCGG AACTGTATTC CTATGCACTG GCGACCTATT CAAATGAAGT GGTATTTCCC
AGAACAAGGC TGGCTTACTC CATCTTCAAG ACATTTAAAC ATGATATTGA AGGCGAACTG
GGTATACGTT ATCTGAATGC AGACAGTTCC AACAGCATTT CCGGTGTAGC TTCCATAGCG
AAGACCTGGA AAGATTTCTG GGTGAATTTC AGGGCTTATT TCATCAGTGA CTCGCCTGAG
TTCTATACTT CCTACAACCT GACCACGCGT TATTATATGA ACCGTCAGCA GGATTATATC
TCATTTACAG CGGGTCTTGG TACTTCTCCG GATGACCGCA GCCGTCTGAT ACAGTTCCCT
AAACTGGCAG GATTGTTGAC CCGTAGTGTG GGAGCAGGTT ACCAGAAAAC ATTTAAATAC
CGTACTACCG CAGGCATATT CGGTACATGG ATCAACCAGA AAGTGACCAA TACCGATTTC
CAGAACCAGT ACGACATCTA TATAACCCTG CAACGTAAAT TCTAA
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| Protein sequence | MSLFKYILSG TVLCLSLQVQ AQIFSKGKDA DELYNEAVKE TKLNHYQKAI QLSREALEKR
PDFVDQQLLL GRLYMLTGNA ELARKYVKLV LAKDPMYKDA YLYAINIELG ARKYEEAECY
VDEGLYHYPS DKELMLKKLG ILDAAERFFQ GGVYADNLLD KYAGDTSVQR AYTGHYLLAG
HYYQQRNNQL LSQENYEKAL MLDPDNEEAK AAINSMYVRS GSFTKAIEQV NAALAINPGS
YELMMRKLGL LQDMHDYAGA IDQLQQILKR WPADAKARST ETTLRMEAAA WYANTDPFLL
YAGIAEKNPG NREALDKVIG MSMSRGAYRE ALAWINRGLK NNPNDQRLLS LKLDVLESDR
KFAEAALLAE RLRYNNAGTA DQRSRYSALK IASGRDYLAQ QQYDLALAEF DKALQTDPRD
TTAMDLMANT YINQKDHIHA LEVLDKALAV YPNNSRFLLK KSSVLAETGQ YDEAADIAAQ
LLNQHPQDAK YSANLVDLRL TAGRKLMQAE EYDMAAGEFR AVLVQSPDNI EALNYLINLE
TAIGQSDSAL VYADQGLQYY PDNKELLLKK AGILTDMQRY TEANAISYQL MQRYPFTIKY
RTAYTDGLIA EGNTYQRNNA PDSALALYRQ VLNINRKDSL ALQYSINLLN GKQSYDSALA
YANQGIRYYP NNESFIQKRA VTLENKKMYA EGALAADSVV KLNGNPVNVD YADYLHSKTM
KNQFGMFFLH SSYDYQDTKY NIATLEYRHF FKRGSYAARL NYAGRQQGTG LQGEAELYYT
HNPELYSYAL ATYSNEVVFP RTRLAYSIFK TFKHDIEGEL GIRYLNADSS NSISGVASIA
KTWKDFWVNF RAYFISDSPE FYTSYNLTTR YYMNRQQDYI SFTAGLGTSP DDRSRLIQFP
KLAGLLTRSV GAGYQKTFKY RTTAGIFGTW INQKVTNTDF QNQYDIYITL QRKF
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