Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cpin_2170 |
Symbol | |
ID | 8358322 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Chitinophaga pinensis DSM 2588 |
Kingdom | Bacteria |
Replicon accession | NC_013132 |
Strand | + |
Start bp | 2655737 |
End bp | 2658928 |
Gene Length | 3192 bp |
Protein Length | 1063 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 644964354 |
Product | exodeoxyribonuclease V, gamma subunit |
Protein accession | YP_003121863 |
Protein GI | 256421210 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG1330] Exonuclease V gamma subunit |
TIGRFAM ID | [TIGR01450] exodeoxyribonuclease V, gamma subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.411228 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 38 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCACTAT ATCTGAGAGT GTCTAATTCC CTGGAGAACC TCTCCATGGG ATTGGCACAG ACACTGAAAG CTTCCAACAG CCAGGTGTTT GAACAACACC TGATCGTCAC ACAGACGGAA GGGATGAACA ACTGGTTGAA ATTACAGCTG GCAGAATACC TGGGTATTGC TGCCAATTGC CGTTTTCTCA AACCGAATGA TCTGATCCAT CAGATCTATT TCCTGATGGA TGGTCAGTAT TCGGAAATGC TTTCCGGCAG AAATCTTACC TGGCTGTTGT ACAAATTGCT GGGAGAAGAT ATCTTCCGTG AAACCTATCC TGCCGTCGCT ACTTATTACC ATACAACAGA ACCGGATAGC GATCTGAAAA GAATGGCCCT GGCAGAAAGG ACAGCTGACC TTTTTGACCA GTACCAGATC TATCGTCCGG AGATGATCAA TGAATGGAAT GCGCCACCGG AAGACCCGTT TGCAAAGATT GACTGGCAAC AATATCTGTG GACAGAAGCC AAGAAAGTAT CTGGTCATGC GCTGCCTGAT AAAACCATTA TCGGACAGCA CATCCTGGAT ATGCTGAAGA ATCCTGATCA CCAGGAGACG CTGGCACACC GGATGAATAC CGTACATCTG TTCGGTCTCT CCATCATCAC AGCTTATCAC GTGCAGATCC TGCATGAACT GTCTTCCTTC ATTGATATCT ATTTCCATAT CATCAACCCC TCTCCGGAAC TTTACTGGTT TGATGATAAG AGTGAGAAAC AACAGGCACG CTGGCGATTG AAAGGTCGTC CTATCCACGA ATCGGATACA GCCGGTAATC CGTTGTTGAT GGGATGGGGT AGGGTCGTAC AGGATACTTT CGGCCTGTTC TTCAAATATG ATGCTTTTAT CAACGCCTAC GAAAGCGAAG GACTGGTAGA GCCACAACCG GATACCTTGC TCAACAAAGT ACAGCACGAT ATCTTTCTTA ATGCCAATGA GCAACGGCAT CCGATCTTCC CGGAAGATGT GGAAGATGGA TCTATCACGA TCAACAACTG TTACACGGTT GCCCGTGAGG TAGAAGTCCT GTACAACTAT CTGGTACATC TCGTAGATAA AAAAAGAGAA ACCTTATCTC CCCGTGATAT CGTTGTCATG GTGAGAGATA TTGACGTATA TGCGCCTTAT ATCAAGGCGA TCTTCAACAA TGCCCCTTAC AAGTTCCGGT ATACGATCGC GGATGAAAGC TATGCGGACA GCGATAACCT GTTCAATGCC CTGCACGCCA TCCTGCGATT GAATGAAGAC AATTTTAAGG CGGAGGAAGT GCTGCAGTTA CTGGATTCTT CCTATGTCCG CAAACGTTTT GGTATCAACA ACGTACCATT GATCCGGCAT GTTGTTGACG AAGCAAATAT CCGCTTTGGT ATTCACGGGG CTAAAGAAGA TGAAACCTAT CTTGTCAGCT GGAAATATGG TATCAAACGT ATCATGTATG GTATCTGTAT GAGCGGCGAT CAGGAATATG GTAAAGGAGA GGAAGGGTTC TTCCCGCTGG ATATACTGGA AGGGAGTGAT AGTCTGGAAG TGATCCGATT CTGTCATTTT GCCGAAGTAC TGATCTCTGC CATAGAAGAT CGTAAGAAAG AACGTAGTAT CAGTGGCTGG GTAGAGTATA TCGAGGGAAT ATTGCACAAT ATGGTCTATG AACCGGAAGA GGAAATAGAC GAAGACTATA ATACACTCAT GCAGCAGTTG TCGGATTACA ACCTGCTGAA TGAATATATG AGCGATACAG TGGCTTTTGA CGTGTTCAGT CATAGCTTCC TGCAAACACT GACGGGTACT ACCCGTACAG GTTTGTTTGT AAACGGAGGG ATCACTTTCT GTTCCCTGAT CCCGATGCGT AGTATTCCCT TCAGGGTAGT GGCGATGCTG GGACTGGACT ATGATAAGTT TCCCCGCCGG GAACAGCCGA TCGGCTTTAA CCTGATGGAG AAAAACAAAC AGCGGGGCGA TCGTAATGTA AAGGATAACG ATAAACACCT GTTCCTGGAA ACGGTGCTTT CTGCACGGCA ATACCTGTAT ATCAGTTACG TCGGACAAAG CGCCAAGGAT AACAGTCGTA TGCCGCCTTC TGCATTAGTG GATGAACTGC TGGATTATAT AGAATCCGGT TGTGAGGATG CCGAGGGAGT CAGGAACCGC CTTGTTACCA GACAGCCTTT ACAGGGCTTT AGCAGAAAAT ACGGACAGGG TGATGAACGG CTGTACAGTT ATCTGAATAC CGCTGTGCCG GAGCGTATCA TTACCCGTGC TGATAAGGCG ATGGAACAAC CATCCATTGA GGAAATTGAC CTGGATGAAC TGGTCCGTTT CTTTAAGAAT CCTTTTAAAG CTTACTATAA CAAAGTACTG GGGATCTATT ATAACGACGA ACAGGTGCTG TTGAATGAAA CAGAGATCTT CCACCTGGAT AGTTTGCAGA AATGGAGCCT GAAGAATGAA TTGTTGCAGA TGGATACCAA TGCCATTGCC AACATGAAGA TCCGCCTGGT GAAGACGGGA CGGCTGCCAC TGAAGAATAT GGCTTATGTG GCTTTGCAGC AGATAGAAGC AGAGGTACAG CCGGTACGCG AGAAATTCCG TGCCTGTATC AATGGGGCGG AAGAACAATC CGTACAGGTG AATCTGGATA TAGAAGGCAC CTTGCTGAAA GGAACTATTA ACGGTGTATT CGATGGTAAG CTGGTACAGG TATCCTGGTC TAAAAGAGAG GACAAATACC TGATGGAGGC TTATATCCGG TACCTTGCCG GACGGGCGGC CGGTGTGCTG GACGGAATGT GCTTTATCTC GGGAGCCAGC AAAAGAGAAG CCTTTGAGGC GATTCCCCTG GCACAACAGG AAGCATTACG AAGACTGACG GCATTAGTAA AGATTTTCAG AGAAGGCTTT GAGAAGATTA CGCCGTTTTA TCCTGACTTT GACATCAAAC CGGCAGATGT GGCCGGACTG GATTTCAGTA AATTCAGTAA AAAGGTGGAT AAGGCCCTGG ATAAAGGGGA TGACATCACC ATTGATCCAT ATATCTCCCG GGAGTATGAA AATGGTTTCT TTAAAGATGA AACGATGCTG GATACTTATA AAGTGATTTG CAGTCATCTG CTGGTACCGC TGGCGGAAAT AATTCCAGGT TATTACAATT AA
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Protein sequence | MALYLRVSNS LENLSMGLAQ TLKASNSQVF EQHLIVTQTE GMNNWLKLQL AEYLGIAANC RFLKPNDLIH QIYFLMDGQY SEMLSGRNLT WLLYKLLGED IFRETYPAVA TYYHTTEPDS DLKRMALAER TADLFDQYQI YRPEMINEWN APPEDPFAKI DWQQYLWTEA KKVSGHALPD KTIIGQHILD MLKNPDHQET LAHRMNTVHL FGLSIITAYH VQILHELSSF IDIYFHIINP SPELYWFDDK SEKQQARWRL KGRPIHESDT AGNPLLMGWG RVVQDTFGLF FKYDAFINAY ESEGLVEPQP DTLLNKVQHD IFLNANEQRH PIFPEDVEDG SITINNCYTV AREVEVLYNY LVHLVDKKRE TLSPRDIVVM VRDIDVYAPY IKAIFNNAPY KFRYTIADES YADSDNLFNA LHAILRLNED NFKAEEVLQL LDSSYVRKRF GINNVPLIRH VVDEANIRFG IHGAKEDETY LVSWKYGIKR IMYGICMSGD QEYGKGEEGF FPLDILEGSD SLEVIRFCHF AEVLISAIED RKKERSISGW VEYIEGILHN MVYEPEEEID EDYNTLMQQL SDYNLLNEYM SDTVAFDVFS HSFLQTLTGT TRTGLFVNGG ITFCSLIPMR SIPFRVVAML GLDYDKFPRR EQPIGFNLME KNKQRGDRNV KDNDKHLFLE TVLSARQYLY ISYVGQSAKD NSRMPPSALV DELLDYIESG CEDAEGVRNR LVTRQPLQGF SRKYGQGDER LYSYLNTAVP ERIITRADKA MEQPSIEEID LDELVRFFKN PFKAYYNKVL GIYYNDEQVL LNETEIFHLD SLQKWSLKNE LLQMDTNAIA NMKIRLVKTG RLPLKNMAYV ALQQIEAEVQ PVREKFRACI NGAEEQSVQV NLDIEGTLLK GTINGVFDGK LVQVSWSKRE DKYLMEAYIR YLAGRAAGVL DGMCFISGAS KREAFEAIPL AQQEALRRLT ALVKIFREGF EKITPFYPDF DIKPADVAGL DFSKFSKKVD KALDKGDDIT IDPYISREYE NGFFKDETML DTYKVICSHL LVPLAEIIPG YYN
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