| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_1648 |
|---|
| Symbol | |
|---|
| ID | 8357790 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | + |
|---|
| Start bp | 1985567 |
|---|
| End bp | 1987966 |
|---|
| Gene Length | 2400 bp |
|---|
| Protein Length | 799 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 644963828 |
|---|
| Product | Transketolase domain protein |
|---|
| Protein accession | YP_003121345 |
|---|
| Protein GI | 256420692 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0022] Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 42 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATAGAAA ACAATGAACT GACTATGAAT ATGGAAAGCC GGTTATCATT CGACGAATTT
CGGAAAGAAG TACTGAATGA TTATCGCCTG GCCTGCGAAA GCAGGGAAGT TAGTCTGCTG
GCCCGTAAGG AAGTACTTAC CGGAAAGGCC AAGTTCGGTA TTTTCGGAGA TGGAAAGGAA
GTGGCACAGA TTGCCATGGC CAAATATTTC CAGCCTGGTG ATTTTCGCTC GGGTTATTAC
CGTGACCAGA CTTTTGCCTT TGCTACAGGT ATTGCCACGC CAGAACAATT CTTTTCACAG
ATGTATGCCG ACCCTGATCT GGCGAATGAG CCATTTTCAG GAGGACGCCA GATGAATTCC
CATTTTGCTA CACCTAACCT TGCAAAGGAT GGTAATTGGC TGGACCTGAC CAGTATCAAG
AATACCGCAA CAGATATGTC GCCTACTGCC GCGCAGATGC CACGCGCGCT GGGGCTTGCT
TTCGCATCCA AATTATTCAG AGATGTGGAA GTATTGAAAG AATTCTCCAA GCTATCCAAT
AACGGTAATG AAATCTGCTT CGCTACTATC GGCGACGCCT CTACATCGGA AGGACATTTC
TGGGAAACCA TGAATGCAGC CGGCGTACTA CAGGTGCCAC TGGCGGTATT TGTATGGGAC
GATGGTTATG GTATCTCCGT ACCGCGTAAA TACCAGACTA CTAAAGATTC AATCAGTGCC
GCACTGGAAG GATTCCGTAA AACGGAAGAT TCTAACGGTT TTGATATTTA TACTGTGAAA
GGCTGGGATT ATGCCGCTAT GTGTGAAACC TTTGAAGCCG GTATCCGGAA GATGAGAGAA
ACACATATTC CTGCATTATT CCATGTAGAA GAAATGACGC AACCACAGGG CCACTCTACC
AGTGGATCTC ATGAGCGTTA TAAGAGCAAG GAACGTCTGT CCTGGGAAAA GGAGTTCGAC
TGTAATAACC AGATGAGACA GTGGATACTG GAAAATGCCC TGTCTGACGA AGCGACCCTG
CTGGCAGTGG AAGCTGAAGC TAAAACAGTC GCCCAGAATG CGCGTAAAAA TGCCTGGGAG
AAATATATTA CTCCGATCCG TCAGCAGGTA CAGCAACTGT TGAGCTATGG TGAAGCCGTG
GTGGGGCTGC CTGATGTAAA CAGCGAGCTG GTAAAGCAGC TGCTGAAAGA TCTGCAGGCA
AACCGTGAAC CGTTGAGACG CGATGTGCTG AAAACAGCAG CTAGTATCCT GTTTGCACAC
AGACGTGTAA AAGCGCCTGC GATGGATGCA CTGAAGCAGC ATTATGAGCA TCTGCTTGCG
AGCGAAAAGA ATAACTATAA CTCCCTGTTA TATGCAGAAG GCGTCAACTC TGTGCAGAAC
GTACCGGTTG TGCCGGCAGA ATATGACAAT AGTGCGCATC CGATAAATGG CTATGAAGTA
TTAAACAAAT ACTTTGATCA GCTGATCGAA AACAACCCGA AAGTATTCGC TTTCGGAGAG
GATGTAGGTA AGATCGGTGA TGTGAACCAG GGTTTTGCCG GTTTACAGCA GAAACATGGT
AAGGAACGCA TATTTGATAC AGGTATCCGT GAGCTCACTA TTATGGGCCA GGGTATCGGT
ATGGCGCTCC GTGGGTTACG TCCTATCGCG GAAATACAAT ACCTGGATTA TCTGATCTAT
GGTCTGCAAC CGCTCAGCGA CGATGTGGCC AGTCTCCAAT ACCGTACAAA AGGTATACAG
TACTGTCCTA TCATCGTTCG TACCAGAGGT CACCGTCTGG AAGGTATCTG GCACTCCGGT
TCTCCGATGA GTATGATCCT TGGTTCTCTG AGAGGAATGA ATGTATGTGT ACCACGTAAC
ATGGTACAGG CTGCCGGTAT GTACAACACC CTCCTGGCCG CTAACGAGCC TGCACTAGTG
ATCGAATCGC TGAATGGCTA CAGGCTGAAA GAGAAACTGC CGGTGAACCT GGGTAGCTTT
ACGGTGCCGC TGGGCGTACC AGAAGTGGTA CACGAGGGTA CGGATATTAC GATCGTTTCT
TATGGTTCTA CGCTACGTAT TATCGAAGAA GCGATACAGT CTCTGGAGAA ATTCGGTATT
TCCTGCGAAC TGGTAGATAT ACAGACTTTA TTACCATTTG ATATCAATCA TCAGATTGTT
GAATCACTGA AGAAGACAAA CCGTATTCTC TTTGTTGATG AAGACGTTCC TGGTGGAGGT
ACTGCCTATA TGTTCCAGCA GGTAATGGAA TTGCAGGGTG GTTACAAATG GCTGGATGTT
GCACCAAGAA CATTGAGTGC ACAGGCCCAC AGACCTGCAT ATGGTTCTGA CGGGGATTAC
TTCTCCAAAC CAAATGTGGA AGATGTGATC AGGGTAGTGA TGGAAATGAT AGAAGAATAA
|
|---|
| Protein sequence | MIENNELTMN MESRLSFDEF RKEVLNDYRL ACESREVSLL ARKEVLTGKA KFGIFGDGKE
VAQIAMAKYF QPGDFRSGYY RDQTFAFATG IATPEQFFSQ MYADPDLANE PFSGGRQMNS
HFATPNLAKD GNWLDLTSIK NTATDMSPTA AQMPRALGLA FASKLFRDVE VLKEFSKLSN
NGNEICFATI GDASTSEGHF WETMNAAGVL QVPLAVFVWD DGYGISVPRK YQTTKDSISA
ALEGFRKTED SNGFDIYTVK GWDYAAMCET FEAGIRKMRE THIPALFHVE EMTQPQGHST
SGSHERYKSK ERLSWEKEFD CNNQMRQWIL ENALSDEATL LAVEAEAKTV AQNARKNAWE
KYITPIRQQV QQLLSYGEAV VGLPDVNSEL VKQLLKDLQA NREPLRRDVL KTAASILFAH
RRVKAPAMDA LKQHYEHLLA SEKNNYNSLL YAEGVNSVQN VPVVPAEYDN SAHPINGYEV
LNKYFDQLIE NNPKVFAFGE DVGKIGDVNQ GFAGLQQKHG KERIFDTGIR ELTIMGQGIG
MALRGLRPIA EIQYLDYLIY GLQPLSDDVA SLQYRTKGIQ YCPIIVRTRG HRLEGIWHSG
SPMSMILGSL RGMNVCVPRN MVQAAGMYNT LLAANEPALV IESLNGYRLK EKLPVNLGSF
TVPLGVPEVV HEGTDITIVS YGSTLRIIEE AIQSLEKFGI SCELVDIQTL LPFDINHQIV
ESLKKTNRIL FVDEDVPGGG TAYMFQQVME LQGGYKWLDV APRTLSAQAH RPAYGSDGDY
FSKPNVEDVI RVVMEMIEE
|
|---|
| |