Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cpin_1421 |
Symbol | truA |
ID | 8357541 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Chitinophaga pinensis DSM 2588 |
Kingdom | Bacteria |
Replicon accession | NC_013132 |
Strand | + |
Start bp | 1698972 |
End bp | 1699724 |
Gene Length | 753 bp |
Protein Length | 250 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 644963580 |
Product | tRNA pseudouridine synthase A |
Protein accession | YP_003121119 |
Protein GI | 256420466 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0101] Pseudouridylate synthase |
TIGRFAM ID | [TIGR00071] pseudouridylate synthase I |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.126301 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 38 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGATACT TTATAGAGGT AGCATACAAG GGTACCAGCT TTGGTGGTTT TCAGATTCAG GATAATGTGG AGACGGTGCA GTCGGTTATT GATCATGCTA TCAGTACATT AATGAGAGGA GCTATAGTAA CGACAGGTTC CAGTCGTACA GATGCGGGTG TACATGCAAG GCAGAACTTC CTGCATTTTG ATATGGAGCA GCCATTGCAT CCGCAGTTTC TCTATAAGGT GAATGCGATA TTGCCACCGG ATGTGGTGAT GCGTAATATA TACCGTGTAG CGGATGACGC GCATTCGAGG TTTGCGGCAT TGAGTCGCTC TTATGAGTAT ACCTTATATA TGGAGAAGGA TCCGTTTATG AGGGACAGGG GTTATTTCTT CCCGTATACG TTGCATCCGG AGCTGTTGCA TGAAGCGGCT AGTGTGTTGA GAGAGTACGA GAACTTCATG ACGTTTTCCA AGCGGAATAC ACAGGTGAAG ACATACAACT GTAATATCAT GTCGTCGGAG TGGGAAGTGG GAGAGGACCG TATCGTATAT AGAGTGACGG CGAATCGTTT TTTAAGAGGT ATGGTGAGGG GAATGGTAGG TACGATGTTG AGAGTAGGGC GGGGGAAGCT GACGATGGAT GGTTTCAGAG AGGCGATAGA AAGCCGTAAT TGTGTGAATG CTGATTTCGC GGTACCGCCG CAGGGATTGT TTTTGATGAA GGTAGCTTAT CCGGAGGGGA TGTTAGCGGA CAAGGTGCAA TAA
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Protein sequence | MRYFIEVAYK GTSFGGFQIQ DNVETVQSVI DHAISTLMRG AIVTTGSSRT DAGVHARQNF LHFDMEQPLH PQFLYKVNAI LPPDVVMRNI YRVADDAHSR FAALSRSYEY TLYMEKDPFM RDRGYFFPYT LHPELLHEAA SVLREYENFM TFSKRNTQVK TYNCNIMSSE WEVGEDRIVY RVTANRFLRG MVRGMVGTML RVGRGKLTMD GFREAIESRN CVNADFAVPP QGLFLMKVAY PEGMLADKVQ
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