| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_1394 |
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| Symbol | |
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| ID | 8357513 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chitinophaga pinensis DSM 2588 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013132 |
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| Strand | + |
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| Start bp | 1657184 |
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| End bp | 1660573 |
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| Gene Length | 3390 bp |
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| Protein Length | 1129 aa |
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| Translation table | 11 |
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| GC content | 37% |
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| IMG OID | 644963552 |
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| Product | YD repeat protein |
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| Protein accession | YP_003121092 |
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| Protein GI | 256420439 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | [TIGR01643] YD repeat (two copies) |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 52 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGACTA AAATAACAAT ATTATTATTT GCACTTGTAT CGCCATTCAT ACGTGTTATG
GCGCAGGCGC AAGGAGGGCT GGAAATACCC AATTATACGG CGCACTCTCC CAATGTGGCG
GCGCTCGGTC AGTATGGAGA ATATAAGGTA GAGCAATCAA CGGGTGTACC CTCTATATCA
ATACCGTTAT ATACAATAAA GGGAGGGAAA TTGGAACTGC CAATATCTTT ATCTTATCAT
GCCAGTGGGA TAAAGTTAGA TCAGGAATCC TCGTTTGTGG GACTTGGATG GACACTGAAC
GCAGGAGGAG CTATTGCAAG AGTTGTCAGA GATAAGGCCG ATGAGGGAAG CTGGGGATTT
TTAATAACCG GTAAATCTAT TCCCAATTAT AATTCAATTG ATGAACTGGA CGCCGCGGGA
AAAATTGGTA ATAATGCGTA TTTGGCTTCC GCTGTAAATC TGGATAAGGA ACCGGATAAT
TTTTCAGTAA ACACCAATTT ATTTCGTGAT GAGTTCTGCT TGGATAGTAC AGGAAGGCTT
ATAAGTATGA ATCTAGATTC AAATAAGTAT ACCGCCGATT TTGTAAATAA TATAATTATT
GCAAAGGATA AAGTTGGTAA TACCTACAGA TTTGGCAAGG CGCTGGATGG GACGGCTACT
GTTGAAACCA GTATTACAAA TTATTCCTCT GTTGACGATG GTGTTGCTAA CGGAACAGTT
GAAAGCGGGA GATATATATC TGGCTACTAT TTATCGGAAA TTATTTCTGC AGATAATTCG
GATACTATAT TTTTTAAGTA CAAAAAAGGC CATTATTTAG AAACGAAGGT AGTAAATACC
ACCCGTTATA TTTTGGATGA TGGAGGTCAG CTTTCTACAA TTGATGCCAA TGGACAAAAC
TTTGATGCGA CAAGCATAAC ATCTATGACC ACGACAATTC CAGATGTCCA GGTTCTGGAT
AAAGTTCTTT TTAGGAATGG TTCACTAGAG TTTACCAGCG CTGATGACAG ATTGGACTAT
CCTGGTAATC CCGGTTCCCG TTTTAGAATA ACCGGATTTA ATGTTTTTGA TAGCAAAAGG
AATTTGATAC AGACGGTAGC GTTTCTGAAT AATAGTTATT TTGAAAGAAC CGCATGGGGG
AAGCCATTAA TTAACATAGA TATCCCTGAG GTTAAGAAAA AGAGTCTGAA ATTAAATGGA
GTCGCTTTTT ATGATAAAAA AGGAATGTTC ATTAATGATT TCAAGTTTGA ATATGATGCT
ACACCATTGC CTCCTAGGAA TACAACCCCA CAGGACTTCT GGGGGTATTA TAATGGAAAG
ACCAATGAAA CCTTAATTCC TCGTACATTT TATACTAAAC TATATGACGG ATCCCCGGTT
TATGTTGGTT CAAATCGTGA CGCTGATTTC AACTATATGA AGGCAGGTAG TTTGAAAAAA
ATTACATACC CGACCGGAGG ATATACAGTC TACGATTTCG AGCCTAATTA TTACCTTAAT
AAGCAACAGC AGGAGAACAA GGTTGAACGT TTGAAATCTG TCAGTTTGTA TGCAATAAAC
CGTTTACCAA GTTGTGACCT GGTTGATTTT CTTAATGGCG TACCTGCTAA TAATAGCTTA
GAATTTACGA TCACTGAGGA TATTGGATCA TCATCAACAA GTGCTAATCT GACTGTAAGT
TTCAGTGGAT ATAAATATAC ACAGAACGCA CAATCCATGA CCTTCAAGCT GACAAATCTG
TCCAATAATT CAGTCTACAA CTTTGAGCAG TCGCCAAGTG AAAAGGGACA ACGAAAAACA
GTAAATCAGC AAATTACAAT TCATCCGGGA GATAGATTCA GATTAGAGGC CCGGACTAAC
GGCGTTACAG AATCAGACTT TAGTATATGC AACAGCCCAT ATATTGAATC TTTGTTGACA
TACAAATATT GGGAGGTCTC AACAATAGAA AATGTACAGC CGATACAGGC GGGTGGTTTA
AGAGTAAAAA GGATCTCGAA CTACGAATCT AACGATTCAA TTATTACAAG AAAGATGTAC
GAATATGGTG ATACAAAATA TAATGTAGGA GTTGGGGAAC TTATTACGAC GCCAGGAAAT
AATTTTTATC GTTATCCCAA ATTGTATACT GGTATCAATG CTAGTTCTGA TTTGGTGAAA
ATGATGTGGT TTTCTTCAGA AAGCCAGGTT GAACTTGGAT ATAATAAAGG TTGTCCGGTA
AACTATACAA TGGTACAAGA GAAACTTATT GCACCGGATG GCACCCCCAA TGGCAAAACA
GAGTACTATT ATAATCGCGC CGTAGGAGAT TATGAGCCTA AATCAAGCTG GAAATATCCT
TACAATACTA TTATTTATCC GAGCTGGCGT AGCAATGACC TTTTGAAGGT GAAGAATTAC
AAGTATGAGA ATAATAATTT TGTACCTGTT AGTGCTGTGG AATATGAGTA TAATGAATTA
CCGGTAAGGA AGGTTAAAAT CTTAAAATTA ATAGAATATG AACCCGATTT ATATCATGCA
TTCAATGGGG TACTTTTTAT TAATAATCCC AGTCGATTCT ATTACTATAA CTATTATGTA
TCATGTGGGA AAATATTGAG GAAGAAGGAA ATATCCAAGG AGTATGTTGG AACAGACTCA
ATAGTTGTTG AAACAAGCTA TGAGTATAAT AAATATCATG ATATTAACCG GGTATTATCG
GTAAATAGTA AACAGGAATC TACAGAAACT ATAACAAAGT ATACAGGTGA TATCAATTAC
AATAACCTCA TATCAAAAAA CATCCTTGCT TTACCGATAC AACAGGAACG GAGGGTAAAT
GGGAACGTGA CATTTGGTAA TATATTAACC TACAATGAAG CAGGAAATGT TGAAGGCCGG
GCAATATTTT ACTCATCTGC CCCGGTAGCT CCTGTTGCAT ATACTTCCTA CACAGTATTA
CCTCCGCTTT ATAAAAAAAT GCAGTCACTG GTTTACAATT CTACAACGCA AAATGTGCGG
GAAATAATAG ATGAAAGTAC GTTTAATACA ATTTATTTGT GGAGCTATTC GCGTCAATTT
CCTATTGCAG AGATAAAAAA TGCCAGCAGT GCAACTATTT CAGCAATATT GGGAAGTGCA
AATATTGCAG CATTCGAGAC CAAATCTCCT ACTGATGAAG AGGTAAACTT ATTCCTTGCG
CCTTTAAGGA GTGATGCAAG ATTAAAAACC GCTAAAATCA TTACTTATAC ATATTCTCCA
CTTGTTGGAA TGACAAGTAT GACAGATATC AGAAGATACA CAAGTTATTA TGAATATGAT
GGTTTAGGTA GGTTGAGGGC GGTGAAGGAT GGTGATGGTG CAATCCTTAA ACTGTATGAA
TATAAATATG GCGCTTCAAT AACTCAATGA
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| Protein sequence | MKTKITILLF ALVSPFIRVM AQAQGGLEIP NYTAHSPNVA ALGQYGEYKV EQSTGVPSIS
IPLYTIKGGK LELPISLSYH ASGIKLDQES SFVGLGWTLN AGGAIARVVR DKADEGSWGF
LITGKSIPNY NSIDELDAAG KIGNNAYLAS AVNLDKEPDN FSVNTNLFRD EFCLDSTGRL
ISMNLDSNKY TADFVNNIII AKDKVGNTYR FGKALDGTAT VETSITNYSS VDDGVANGTV
ESGRYISGYY LSEIISADNS DTIFFKYKKG HYLETKVVNT TRYILDDGGQ LSTIDANGQN
FDATSITSMT TTIPDVQVLD KVLFRNGSLE FTSADDRLDY PGNPGSRFRI TGFNVFDSKR
NLIQTVAFLN NSYFERTAWG KPLINIDIPE VKKKSLKLNG VAFYDKKGMF INDFKFEYDA
TPLPPRNTTP QDFWGYYNGK TNETLIPRTF YTKLYDGSPV YVGSNRDADF NYMKAGSLKK
ITYPTGGYTV YDFEPNYYLN KQQQENKVER LKSVSLYAIN RLPSCDLVDF LNGVPANNSL
EFTITEDIGS SSTSANLTVS FSGYKYTQNA QSMTFKLTNL SNNSVYNFEQ SPSEKGQRKT
VNQQITIHPG DRFRLEARTN GVTESDFSIC NSPYIESLLT YKYWEVSTIE NVQPIQAGGL
RVKRISNYES NDSIITRKMY EYGDTKYNVG VGELITTPGN NFYRYPKLYT GINASSDLVK
MMWFSSESQV ELGYNKGCPV NYTMVQEKLI APDGTPNGKT EYYYNRAVGD YEPKSSWKYP
YNTIIYPSWR SNDLLKVKNY KYENNNFVPV SAVEYEYNEL PVRKVKILKL IEYEPDLYHA
FNGVLFINNP SRFYYYNYYV SCGKILRKKE ISKEYVGTDS IVVETSYEYN KYHDINRVLS
VNSKQESTET ITKYTGDINY NNLISKNILA LPIQQERRVN GNVTFGNILT YNEAGNVEGR
AIFYSSAPVA PVAYTSYTVL PPLYKKMQSL VYNSTTQNVR EIIDESTFNT IYLWSYSRQF
PIAEIKNASS ATISAILGSA NIAAFETKSP TDEEVNLFLA PLRSDARLKT AKIITYTYSP
LVGMTSMTDI RRYTSYYEYD GLGRLRAVKD GDGAILKLYE YKYGASITQ
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