| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_1276 |
|---|
| Symbol | |
|---|
| ID | 8357392 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | - |
|---|
| Start bp | 1526540 |
|---|
| End bp | 1527835 |
|---|
| Gene Length | 1296 bp |
|---|
| Protein Length | 431 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 644963432 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_003120975 |
|---|
| Protein GI | 256420322 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG2270] Permeases of the major facilitator superfamily |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.322939 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 41 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAAACTG CCAGTAAAAA AGTAATCAAT GGCTGGGCGA TGTATGACTG GGCGAACTCC
GTGTACAACC TGGTAATTAC CACCACTTTT TTCCCTATTT ACTTTACCTC AGCAACCCAT
TCCGCTGAAA CAGGCGACAA TGTCTCCTTC TTTGGTAAAT ACTTCGTTAA CTCCGCACTT
TATGACTATG CAATGGCGGC CGCATTTATA CTCGCCGCAT TGCTGTCTCC TATCCTCTCC
TCTATCGCCG ATACGAGAGG TAATAAGAAA AGATATCTCA TGCTGTTCAC CTGGCTGGGT
GGATTAAGCT GTATCGCCCT GTATAACTTT CGTGGTGGAA ATGTAGAATA TGGCATCATA
TTCTTTATCC TCGCCACCCT TGGCTATTGT GGCGGCCTGG TATTCTATAA CTCCTACCTG
CCTGAACTGG CAGCGGTAGA AGACCGTGAC CGTATCAGTG CCAAAGGTTT CGCTATGGGG
TATATCGGTA GTGTAATATT ACAGCTGATC GGCTTTGTGC TGGTGGCAGT AAAACCATTT
GGTCTCAGTG ACGGAGATGC CGTACGGCTG ACTTTCCTGC TCACCGGCAT ATGGTGGATC
GGCTTTGCCC AGATCACCTT CCTGCGTCTG CCGGCCTCTA AGGGTACTAT ACAGGAACAT
AAGGCGGGTG CGCTGACTGA AGGGTTTCAT GAACTCAAGA AAGTATATGC ACAGGTAAAA
ACCATGCCTG TACTGAAAAA CTTCCTGCGT GGCTTCTTCT TTTACAGCAT GGGCGTCCAG
ACCGTAATGA TGGCAGCTAC GATCTTCGGT AGCCAGGAAT TACACCTGCC TTCCACTAAC
CTGATCGTAG CCGTTGTTGC CATTCAGGTG GTAGCAATAC TGGGGGCATG GGGTATGGCT
AAGCTCTCCG GCAAATTTGG CAACCTGCCC GTACTGATGG TTGTGATCGT ATTGTGGATC
GGTATCTGTC TGGCGGGTTA CCGTATGCAG ACCGCTAATG ATTTCTATAT GCTGGCTGTT
GCCGTAGGTC TGGTAATGGG CGGTGTACAA TCCCTCAGCC GTTCTACTTA CGCCAAACTG
ATGCCGGAAA CAGAAGATAC CACCTCCTTC TTCAGCTACT ATGATGTTGT AGAGAAATTG
TCCATCACTG TCGGCCTGAC CACATTCGGT TACATCCACG AACTGACCGG CAGTATGCGT
AATTCCGTAC TGGCACTTAT TGTTTTCTTT GTGATAGGAT TGATCTGGCT CTTATCAGCA
CAGAAAAAAC AAAAAAGCCT CGCTGCACAA AGCTGA
|
|---|
| Protein sequence | MQTASKKVIN GWAMYDWANS VYNLVITTTF FPIYFTSATH SAETGDNVSF FGKYFVNSAL
YDYAMAAAFI LAALLSPILS SIADTRGNKK RYLMLFTWLG GLSCIALYNF RGGNVEYGII
FFILATLGYC GGLVFYNSYL PELAAVEDRD RISAKGFAMG YIGSVILQLI GFVLVAVKPF
GLSDGDAVRL TFLLTGIWWI GFAQITFLRL PASKGTIQEH KAGALTEGFH ELKKVYAQVK
TMPVLKNFLR GFFFYSMGVQ TVMMAATIFG SQELHLPSTN LIVAVVAIQV VAILGAWGMA
KLSGKFGNLP VLMVVIVLWI GICLAGYRMQ TANDFYMLAV AVGLVMGGVQ SLSRSTYAKL
MPETEDTTSF FSYYDVVEKL SITVGLTTFG YIHELTGSMR NSVLALIVFF VIGLIWLLSA
QKKQKSLAAQ S
|
|---|
| |