Gene Cpin_1170 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_1170 
Symbol 
ID8357286 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp1392552 
End bp1393187 
Gene Length636 bp 
Protein Length211 aa 
Translation table11 
GC content49% 
IMG OID644963326 
Productvon Willebrand factor type A 
Protein accessionYP_003120869 
Protein GI256420216 
COG category[R] General function prediction only 
COG ID[COG4245] Uncharacterized protein encoded in toxicity protection region of plasmid R478, contains von Willebrand factor (vWF) domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones34 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones31 
Fosmid unclonability p-value0.906773 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGACGTC TTCCGGTATA CCTGTTACTT GACACTTCCG GCTCCATGCG CGGCGAACGT 
ATAGAAGCAG TGAAAAACGG ATTGCAGGTA TTGGTGTCAA AATTAAGACA GGACCCCTTT
GCCCTGGAGT CAGTGTGGAT CAGTATTATT ACGTTTGATC GTGAAGTGAA ACAGCTGCTG
CCACTGACTG CTTTGGAGTC ATTACAGTTA CCCGAGATCA CAACGCCTGA ATCAGGGCCC
ACCAATATGG GCGCAGCGCT TGAAATGCTT TGCTCAAAAC TGGATGCGGA AGTTGCAAAG
GGCAGCGATA CGCAGAAAGG CGACTGGCGC CCCTTACTGT TTCTGATGAC GGATGGTAAG
CCTTCCGACC TGGCGGCTTT CCGTGAAGTC GTGCCTAAAG TGAAAAGTAA AAACCTTGCT
GCATTGGTCG CCTGTGCCGC CGGTGCAGAA GCGCAGGACA GTTTCCTGAA AGAACTGACT
GATAATGTTG TACACCTCGA TACCGCAGAT AGCTCAACAC TGATGTCCTT CTTTAAATGG
GTATCAGCAT CTATCGGTAC CGGCAATAAG AGTGTGGGTA CAACAGAAGA AATACAACTG
CCACCACCAC CGGCAGAAGT ACATGTAATT ATTTAA
 
Protein sequence
MRRLPVYLLL DTSGSMRGER IEAVKNGLQV LVSKLRQDPF ALESVWISII TFDREVKQLL 
PLTALESLQL PEITTPESGP TNMGAALEML CSKLDAEVAK GSDTQKGDWR PLLFLMTDGK
PSDLAAFREV VPKVKSKNLA ALVACAAGAE AQDSFLKELT DNVVHLDTAD SSTLMSFFKW
VSASIGTGNK SVGTTEEIQL PPPPAEVHVI I