| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_1137 |
|---|
| Symbol | |
|---|
| ID | 8357253 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | - |
|---|
| Start bp | 1356931 |
|---|
| End bp | 1358058 |
|---|
| Gene Length | 1128 bp |
|---|
| Protein Length | 375 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 644963293 |
|---|
| Product | Tetratricopeptide domain protein |
|---|
| Protein accession | YP_003120836 |
|---|
| Protein GI | 256420183 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3063] Tfp pilus assembly protein PilF |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 0.451573 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTTGGCA CATTTTTTCT TTATTTTTAC AGCAAACGTC TGATCGGCAT GAATATGAGG
GCTTCATTAT TAAGAGCAGG TTTATTTACC GCTATATTAT TTTCTTCTGT AATAACTGCT
TCCGCACAGG ATGCCAGGGA ATTATATACA ACAGCGACAG GTTTTATACG TGATGGTGAT
TATTCCAATG CTATCCTGGT ATTAAACCAG GCACTGCAAC AGGAACCTGA TAATATAGAC
TTCAAAAAAC AGCTCGGCTT TGCATATTAC CTCCAGGGAG ATATGAGTAA AGCTAAAAAT
ATCATTGAGC CCATACTCAA CAAAAAAGAA GCAGACGAGC AGACCTTCCA GATCGCTGGT
AACATCTATC AGTCCCGCCA GGAATGGAAA ACAGCACAGA AGCTGTATGA AAAAGCATTG
CGTAAATTTC CGGAAAGCGG AGAACTGTAT AACGATAACG GACAGTTGCT CATGTTCCTC
AAAGTATTTG AAGGCGGCAT GGGAAGCTAT CTGAAAGGTA TCGAGAAAGC ACCGAACTTC
TCCAGCAACT ATTACAATGC CATTAAAGCA TATGTGTATA TGAATAATCC CGTGTGGGTA
ATCATCTACG GGGAAATATT CGTCAACCTG GAAAGTTATA CTGCACGTAC TGCCGAAGTC
AGAAACCTGT TGCTGGATGC CTACAAATCT TTATACAACG ATCCGGCACA GCTGAACAAA
GCGATTGAAG ACGAAAACGA AAATAAAAAC AGGAAGAAAG CAGTCGCTGA TTTTGCCGTT
GCATTCAAAG CATCCATGGG GAAACAGATC AGTGTTGTAA TGGCAGGCAT AGATCCTGAA
ACGCTCATTA TGCTGCGTAC CCGCTTCCTG CTTGACTGGT ACAGTTTTTC CGGTCTGCGT
TTTCCATATG CACTTTTTGA CTATCAGCGC TCCCTGCTGA AACAGGGAAT GTTTGAAGCG
TATAACCAGT GGATGTTTGG TCCTGTTGCC AATCAGCCGG CATACAGAGC CTGGACAAAC
ATGCACAAGG CAGAATACGA TGCTTTTTTA CAATATCAGC GTAATCACCC ACTGAAGTTA
AGAGCGGATG AATATTACAA CGACAACAAG TTTACGATGG TGAGGTGA
|
|---|
| Protein sequence | MFGTFFLYFY SKRLIGMNMR ASLLRAGLFT AILFSSVITA SAQDARELYT TATGFIRDGD
YSNAILVLNQ ALQQEPDNID FKKQLGFAYY LQGDMSKAKN IIEPILNKKE ADEQTFQIAG
NIYQSRQEWK TAQKLYEKAL RKFPESGELY NDNGQLLMFL KVFEGGMGSY LKGIEKAPNF
SSNYYNAIKA YVYMNNPVWV IIYGEIFVNL ESYTARTAEV RNLLLDAYKS LYNDPAQLNK
AIEDENENKN RKKAVADFAV AFKASMGKQI SVVMAGIDPE TLIMLRTRFL LDWYSFSGLR
FPYALFDYQR SLLKQGMFEA YNQWMFGPVA NQPAYRAWTN MHKAEYDAFL QYQRNHPLKL
RADEYYNDNK FTMVR
|
|---|
| |