Gene Cpin_1109 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_1109 
Symbol 
ID8357223 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp1327541 
End bp1328332 
Gene Length792 bp 
Protein Length263 aa 
Translation table11 
GC content46% 
IMG OID644963263 
ProductNitrilase/cyanide hydratase and apolipoprotein N- acyltransferase 
Protein accessionYP_003120808 
Protein GI256420155 
COG category[R] General function prediction only 
COG ID[COG0388] Predicted amidohydrolase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones30 
Fosmid unclonability p-value0.741085 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAGTCG CATTAGCATC ACCTCCTTTC CCGAAGTCCT TACAGGATGG ATTGTTCTGG 
CTTGAAAAGC TGGTAAAAGA AGCAGCTGCT GCAAGCGCTG CAATTATCTG TTTCCCGGAA
TCATATCTGC CAGGTTATCC CGGTATGGGA TATGCACCGG AAGACCGCTC CCGGAAATCT
TTATTGCACG CTTTGGCCAA GGTATGCGAC ATTGCGGCAG AACATGCGAT TACGATCATT
GTACCGATGG ATTGGTATAT AGACGAGCAA CTGGTCAATC TTGCCTTTGT GGTTTCTGCA
AAAGGAGAGG TATTAGGGTA TCAGACGAAA AATCAGCTGG ATCCTACGGA AGATGAGCTC
TGGACAGCTG GTACTACCCG CAGTATTTTT GACGTGAACG GTGTGAAGTT TGGTATTACA
ATTTGTCATG AAGGATTCCG TTATCCTGAA TCTGTCAGAT GGGCTGCACA GCAGGATGCA
AAGATTGTAT TCATGCCTCA TTTTGGTGGC AGTGAAACAG CCGGGCCGGA ATTGAAAGAA
TGGGGAGCGA AGGAAAATCC TTATTACGAA AAGGCTGTAA TGCTTCGGGC AATGGAAAAT
ACAATTTATA CAGCCAGTTC CAATTATGCC TCCCCTTATA CGGATGCAGC ATCCACATTA
GTGGCTCCTG ACGGCTCCTG TGTCGCACAT GAAGCATATG GCCGAGTAGG TGTTGTTGTG
GCTGAAATCG ATCCGGAAAA GGCTAGCGGA TTACTGGCAA AACGATTTAA AAATGCACTC
TATCATTCCT GA
 
Protein sequence
MKVALASPPF PKSLQDGLFW LEKLVKEAAA ASAAIICFPE SYLPGYPGMG YAPEDRSRKS 
LLHALAKVCD IAAEHAITII VPMDWYIDEQ LVNLAFVVSA KGEVLGYQTK NQLDPTEDEL
WTAGTTRSIF DVNGVKFGIT ICHEGFRYPE SVRWAAQQDA KIVFMPHFGG SETAGPELKE
WGAKENPYYE KAVMLRAMEN TIYTASSNYA SPYTDAASTL VAPDGSCVAH EAYGRVGVVV
AEIDPEKASG LLAKRFKNAL YHS