Gene Cpin_1039 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_1039 
Symbol 
ID8357153 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp1247984 
End bp1248787 
Gene Length804 bp 
Protein Length267 aa 
Translation table11 
GC content47% 
IMG OID644963193 
Productalpha/beta hydrolase fold protein 
Protein accessionYP_003120738 
Protein GI256420085 
COG category[R] General function prediction only 
COG ID[COG0596] Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily)  
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones38 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCGTCCT TTTTCCTGCC ATATCTGAAA AGCCGTTTTC ATACCATTCG TGATGGAACA 
GGAGAGGAAT TGCTGATATG TTTGCATGGT TTTGGAGAGA ATGCGGAGAG TTTCAGCCGT
TTACATTATA CCCTGGGAGG GTATTTTACG ATTGTGTCAC TGGACCTTCC ACTGCATGGA
AAAACGGAGT GGCTGGAAGA GCGGCCATTT TCTATGGATG ATCTGAAAGC AGTAATATTA
CTCATTCTGC AACATTACCG CTTTAAGACC TTTTCCCTGA TGGGGTATAG TATGGGAGGA
CGGGTAGCCC TCTGCGTTGT GCAATTACTG GCTGAAAGGA TTGACCGGCT TTACCTGCTG
GCGCCCGACG GGCTTAAAGA TAACCGCTGG CATATGTTTG CCACACAAAC CAATATGGGC
AACAAGCTGT TTAAGCACTG TACCTATCAT CCACAGTTAT TTTTCGGTTT GCTGCGCACC
TGGCGTTCCT TACGTTTTAT CAGTCGGGGA CTGCATAAAT TCACGTTCAA CAGTATGAAT
ACGCTGGAAA AGCGGGAGAG GGTGTATTTT GTGTGGACAT GTATGGGACA GATGATGCCG
GACCGGGAAT TGTGTAAACA GCAACTGAAA AAATACCGTA TCAGCACATT GTTGCTTTTC
GGGAAGTATG ACCGCGTTAT TCCTCCCATA TTGGGTGTAC GGTTTATGGA TGGCACATTC
CCCTGTGAGA TGCAGGTGCT GGAAAGAGGA CACCAGCTGA TCAGTGAAGA TGCCGCGGAA
GTGATCCGGG CATATAGTTT TTAA
 
Protein sequence
MSSFFLPYLK SRFHTIRDGT GEELLICLHG FGENAESFSR LHYTLGGYFT IVSLDLPLHG 
KTEWLEERPF SMDDLKAVIL LILQHYRFKT FSLMGYSMGG RVALCVVQLL AERIDRLYLL
APDGLKDNRW HMFATQTNMG NKLFKHCTYH PQLFFGLLRT WRSLRFISRG LHKFTFNSMN
TLEKRERVYF VWTCMGQMMP DRELCKQQLK KYRISTLLLF GKYDRVIPPI LGVRFMDGTF
PCEMQVLERG HQLISEDAAE VIRAYSF