| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_0392 |
|---|
| Symbol | |
|---|
| ID | 8356498 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | - |
|---|
| Start bp | 467487 |
|---|
| End bp | 468716 |
|---|
| Gene Length | 1230 bp |
|---|
| Protein Length | 409 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 644962539 |
|---|
| Product | protein of unknown function DUF214 |
|---|
| Protein accession | YP_003120092 |
|---|
| Protein GI | 256419439 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG4591] ABC-type transport system, involved in lipoprotein release, permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 0.056313 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGATCTGGC AGTTCGCATC CCGTTATTTC AGGGCTAAAA AAAGTACCAA TGCCATCAAT
ATCATTGCCT GGGTAAGTGT TTCGGCTATT GCGGTAGGTG CAGGCGCGCT GATTGTTATT
CTCAGCGTTT TCAACGGATT TGAAGGACTG GTGAAATCCT TATACTCTAC TTTCTACCCC
TCTGTCAAAA TCAGTGCAGT AAGTGGAAAA AGTATTACCC TCACGCCAGC GCAATTGAAA
AAGATTGCCG GTGTGAAAGG TGTTGCCTAT ATGACGGAAG TGATAGAGGA AAAGGCGGTA
TTGCGCTACG GACAGGGAGA TCAGACGATC GCTATCCTGA AGGGTGTAGA CAGCAACTAC
AATAAAGTGG CTGCTGTCGA TAAAAGCATG TCCCGTGGCA AGTTTGACAC CGGTAATGAG
CAGGATGGCT ATACGGCTGT GCTGGGCATC GAATTGGAAA TGGCGCTGGG CGTAGATGTG
GACAGAGACC TCACTCCGGT CAGCGTATAT CTGCCCCGCA GGAACGTCAG CAGTGTCACA
ACGCCGGAAG ATGCACTTGG CAGCGGTATT CTGTATCCGG CCGGCTCTTT CGCGATTCAG
CAGGAGTTCA ACAGCAAATA TGTGATTACC AATATCGCGT TTATGCGCGG ACTGCTTGGC
TTAAAGGAGG ATGAAATGTC AGCGCTGGAG GTAAAAGGAG CTTCCGGACT GGATGACGTT
GTGCTGAAAC GCCGGTTACA GGAAGTGCTG GGGGCTGACT ATAATCTCCA GACCCGCTAC
GAACAGAATC AGGCTCTGTA CGCTATCATG CAGACGGAAA AGTGGGCGGT ATATGTGATC
ATGAGTTTTA TCCTGGTAAT CGCCGCTTTT AATATGATTG GTAGTCTGTA CATGCTGGTG
ATGGAAAAGC AAAAGGATAT TACGATCCTG AAAGCAATGG GAGCCCGTCC ACAGCTGATC
ACCCGTATAT TCCTGGCAGA AGGGATGATC ATTGCAGCTA TTGGCACTGT CATCGGATTT
GGTATCAGTA TTGGTTTTTG CTTACTACAG CAGCATTTCG GTCTGATCAA GCTGGAGGAG
GACTCTTTTC TGGTGAATGC CTATCCGGTG AGTATGCATA TTTCCGACTT TATCCTGGTG
AGTATAACAA TTGTTGTTAT CGGCGGGGCG GCCAGTTGGT ATCCGGCCAG AAGAGCTGGG
AAACAGGATA TTGAATTAAA AGCAACCTGA
|
|---|
| Protein sequence | MIWQFASRYF RAKKSTNAIN IIAWVSVSAI AVGAGALIVI LSVFNGFEGL VKSLYSTFYP
SVKISAVSGK SITLTPAQLK KIAGVKGVAY MTEVIEEKAV LRYGQGDQTI AILKGVDSNY
NKVAAVDKSM SRGKFDTGNE QDGYTAVLGI ELEMALGVDV DRDLTPVSVY LPRRNVSSVT
TPEDALGSGI LYPAGSFAIQ QEFNSKYVIT NIAFMRGLLG LKEDEMSALE VKGASGLDDV
VLKRRLQEVL GADYNLQTRY EQNQALYAIM QTEKWAVYVI MSFILVIAAF NMIGSLYMLV
MEKQKDITIL KAMGARPQLI TRIFLAEGMI IAAIGTVIGF GISIGFCLLQ QHFGLIKLEE
DSFLVNAYPV SMHISDFILV SITIVVIGGA ASWYPARRAG KQDIELKAT
|
|---|
| |