| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cphy_3310 |
|---|
| Symbol | |
|---|
| ID | 5741589 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium phytofermentans ISDg |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010001 |
|---|
| Strand | - |
|---|
| Start bp | 4028993 |
|---|
| End bp | 4030549 |
|---|
| Gene Length | 1557 bp |
|---|
| Protein Length | 518 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 35% |
|---|
| IMG OID | 641294411 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001560403 |
|---|
| Protein GI | 160881435 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG5434] Endopolygalacturonase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 34 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCCAAA AGTTTCGTAA GTTGGAAGGT ATCGCAATTG TAGTGTTATT CGTATGTCTG
ATAGGTCTTT CGGTTATGTT AGTGAATAAG AAAAGGCCAG CGAAGGAGGT GATTTCGGTT
CAGGAAACAA ATCTAGTTTT GTATGAAGGC CCAAAGTCTT TACGTGATGC TACCAAGGAG
GATTTGGTTT CTGCAAACGA GAGCTCTAAA GATTTTTCAC TTCTTCATTG TACCGATACT
AAAATAATGG TAAATGGATA TGACTGTTAT GTATATGATA CAAATGTAAA TCATTCTAGA
AGATGGTATA ACGATTACAT GCCTCCAAAT GCAAGAACTC CAATTTCCTA TTTTGATTTT
GAAGGTATCG TAGAAGTAAC AATTAAGGTA CCTAATATTG ACCTAGAAAC AGCTAGCGTA
AGTCCATTGC AATATGGAAT TATACCAGTA CTTGATGTAG AAAACCATAC CGTTACATTT
ACAATTACAA AACCTGACCA ATATACCATA ATGTTTAATA ACTCACCGGA AAGAGCGGTA
CATTTATTTG CGAATGAAAT AGAGACGAAT ATACCATCCA AAGATGATAA AGATGTTGTA
TATATTGGAC CTGGAGAATG GAATATTGAA AACATTATTC TTGAGGATAA TCAAACACTA
TATATCTCGG GTGGTGCTGT AATTCATGGC ATAGTAAATG CTAATTTTGC TAAGAATATC
ACCGTTCGCG GAAGAGGAAT TATCGATGGT TCTAAATTTA ATGGATGGAA GGGAAAAGAA
GCATACATAC CATTAAAGTT TGATAACTGC GAGAACATCA CGATTAAAGA TATTATAGTA
TTAAATCCGA ATGCTTGGGT ATGTCAGGCA TTTAATTCTA AAAACGGTAC TATAGATAAT
ATAAAAATTA TATCCTCAAG GCCAAATGGG GATGGTATCA CTTTACAGTC CTGCCAAGAT
TACACCGTTA AAAATGGTTT TGTTCGAAGC TGGGATGATT CTTTGGTAAT TAAAAATTAT
GATGATAACT CAAAAAATAT AAAGTTTGAA AATATGCAGC TATGGACGGA TTTTGCGCAG
TCTATGGAGG TTGGATATGA AACGAATAAA GGCAAACGAG AGAATGCTTT TATCTCTGAT
ATCACATTTG AGAATATTAC GGTGCTTCAT AACTTCCATA AGCCTGTAAT ATCAGTTCAT
AATGCAGATG ATGCAGCGAT AAGTGGAATT ACTTTCAAAA ATATTGTAGT TGAAAATGCT
CAGATGGGAA GTGGCGATGG TGACGAGATG CCATACCTCA TTGACATTAA TATTGCCGGG
AGTTCTAATT GGTCCTCAAC TAGAGACCGA GGAACTATCA AAAATGTCGT AATTGACGGA
GTAGATGTGC TTGGTGGTAA AAACTGCTCT TCAAGAATTA AAGGCTTTGA TGCAGAGCAT
AACATTGATG GTGTTATTTT AAAAAATATC AATGTGTTAG GAGAGAAGAT CACGAATTTG
GAACAAGGAA AATTTGAAGT AGATGAAAAG ACTACAAAGA ATATTATCCT TGAGTAA
|
|---|
| Protein sequence | MSQKFRKLEG IAIVVLFVCL IGLSVMLVNK KRPAKEVISV QETNLVLYEG PKSLRDATKE
DLVSANESSK DFSLLHCTDT KIMVNGYDCY VYDTNVNHSR RWYNDYMPPN ARTPISYFDF
EGIVEVTIKV PNIDLETASV SPLQYGIIPV LDVENHTVTF TITKPDQYTI MFNNSPERAV
HLFANEIETN IPSKDDKDVV YIGPGEWNIE NIILEDNQTL YISGGAVIHG IVNANFAKNI
TVRGRGIIDG SKFNGWKGKE AYIPLKFDNC ENITIKDIIV LNPNAWVCQA FNSKNGTIDN
IKIISSRPNG DGITLQSCQD YTVKNGFVRS WDDSLVIKNY DDNSKNIKFE NMQLWTDFAQ
SMEVGYETNK GKRENAFISD ITFENITVLH NFHKPVISVH NADDAAISGI TFKNIVVENA
QMGSGDGDEM PYLIDINIAG SSNWSSTRDR GTIKNVVIDG VDVLGGKNCS SRIKGFDAEH
NIDGVILKNI NVLGEKITNL EQGKFEVDEK TTKNIILE
|
|---|
| |