| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cphy_2734 |
|---|
| Symbol | |
|---|
| ID | 5742049 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium phytofermentans ISDg |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010001 |
|---|
| Strand | + |
|---|
| Start bp | 3325192 |
|---|
| End bp | 3327486 |
|---|
| Gene Length | 2295 bp |
|---|
| Protein Length | 764 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 32% |
|---|
| IMG OID | 641293826 |
|---|
| Product | AraC family transcriptional regulator |
|---|
| Protein accession | YP_001559834 |
|---|
| Protein GI | 160880866 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG4753] Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.0000030307 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | unclonable |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAATAA AGTTGACTAA AAACAATACA AATAAAAATA CAAGGTTTTT GATACGATTT
GTAACCTCTT ACAGCATATT GCTGATAATT GTTCTTATTA TGGGCATGTT TTTGTATCAA
TACGGAATAA CAGATGCAAC TAATAATCTT CATAAACAGA ACAAAGCGGT TTTAGACAAT
TCCGTATCAG ATATGGATAA TTCCTTAAAG CTTATGCAGG CGCTTTCTAC CCAGATTGCG
AATGATCCTA ATATAAGGAA GGTTCTTCAA TATGATTCCA GATCTATGGA TTTTTACCAC
GATGCGAAAG AAGCAATGAA TTTTTTAACT GACTTTATTC CATTAGGGAA AACACTCCCT
CTAGATGAGT ATTACATTTA TCTGCCTAAA TTAGACTATT TAATGTCATC TAGTATGTTA
ACGGATACCT GGTATTACTA TAAACATTAC AAAGCCTATA AAGAAGCTAG CTACGATGAT
TGGAAGACAA TGCTTTCCTC TTATAATAAT GTTTTTCAAT TTTTGCCGAA TGAAAACTAT
ATAGAAAATG ACATTACTCC TTATATTTAT AAGACACCAG TACAAACAGC TTTATCAATA
AATAAACCAC TTGGTATTGT GTGTTTTGAG ATAAATCGTA ATAAATTGAA TGGTTTATTC
TCAAATCTTG ATTTCTTTCG AAGTGGATTT TTATACGTAA CAGATACTGA TAATAATGAA
GTTTTTCATA TCACTTCAGA TCATAGTCCA GAATTAACCG AGGATTTACT TAACAATATC
ATCACCTCCA TGGATGAAAA TCCGAATCAA GAGTACAAGG AGTTAACATT AGGAAAAGAT
TCTGTTGTTG TTACAACTTC TATCTCACAT GAGAATCAAT GGAGATATTA TTTGGTACAA
CCTGCTGATC TAGTTTTTCA TGATTTAGGG ACCTATCAGA ATACGTATGT CTTCATTATT
ATATTAACCT TACTTTTCTG CTTAATTATG ATTTTTATCT TATCAAAAAG AAATGTGAAA
CCTATCATTG CTATCAATTC AGAATTACAA GATTCCTTGA ATGAGAAAAG TAATCTTAAG
CAAGAATTAG AAGAGCAAAG ACCTATCATT TACAACTCTT ATATGGCAAG AATTATGAAA
GGTCTTATCT CAAATCAAGA AGAATATGAT AAAATTTCCG AATTCTTAGA TTTAAAAATA
GGGGATTATC GTTATAGTGT TCTCTATGCT TGTCTCTATC AAGATCAATT AGAGGTTTAT
GTTGAGGAAC AAACGAATAA TACTGATGCA GGGTGGAATC AAAAATTATA TAAAGATTTG
ATACGAAAAT ATTTCTATCA ATACTTTGGA GATGATATAC TCATCTATGA ATCAGAGGTA
AATGCTTTTG CCATCATGCT TCCTTCTCCT ATGGATCAGC CTATTGAAGA GAGTATTGCG
GATGTTGAAA GTACCTTTTT GGAACTACAC AATAGCTTAA TGGAAGACCA CTCCATTTGG
ATTTATGGTG GATTAGGAAA TCGTAACAGT TATGCTCCAT ATCTATGGAA ATCATACCAA
CAAGCAATAC AAGCTGCCTC TTATGTTCGT GAAGGCAATG TATTCCAAAG TTATCGTGAT
ATCAAACGAG ATAAAACATC ATATTACTAT CCTTTCGAAA TGGCTCAGCA GTTATTAAAC
TTTATTACTT CCGGAAATAC AAAGCAAGTT CAAGAAATAT TCCATCTCAT TCGTTGGGAA
AACTTTGAAT GTAGATCGCT ACCTATTACG GTTGTAAAGT GGCTACTTTC TGATATAAGG
AATACCTTAT TAAAGGTACG TTTTCAAATC AGCGTCTCCG ATACGAATCA CGATGCGATT
GAATCTATCG ACTTATCTTT ACAGGAAAAT AAATCAATTT CTATTTTGGA GGATATTGCT
TTAAACTTAT GTAGCTTATT TGAACCAAAA GCGGATGGAA ATAAGCTAAT TCATACAATA
AAAGAGTATA TCAAGGAAAA TTACAAAGAC TCTTCCTTAA GTCTTAAGAA AATTTCAGAT
GAGTTTAACA TATCGGAAAG CTACTTCTCC TATTTATTTA AGGCAGAAAC CAAACAAAAT
TTTTCAGAGT ATTTGGAATT GATTCGTATG ACACAAGCAA TGAACTTATT AAAAACAACA
GATATCAATG TCAGCGACTT ATACTTAGAG ACTGGTTATA ATAATGCAAA CTCCTTCCGA
AGAGCATTTA AAAAAGTACA TGGAGTTGCA CCTAAAACAA TTCGAGATAC TATGTCAAGT
CATAATGACG AGTAG
|
|---|
| Protein sequence | MKIKLTKNNT NKNTRFLIRF VTSYSILLII VLIMGMFLYQ YGITDATNNL HKQNKAVLDN
SVSDMDNSLK LMQALSTQIA NDPNIRKVLQ YDSRSMDFYH DAKEAMNFLT DFIPLGKTLP
LDEYYIYLPK LDYLMSSSML TDTWYYYKHY KAYKEASYDD WKTMLSSYNN VFQFLPNENY
IENDITPYIY KTPVQTALSI NKPLGIVCFE INRNKLNGLF SNLDFFRSGF LYVTDTDNNE
VFHITSDHSP ELTEDLLNNI ITSMDENPNQ EYKELTLGKD SVVVTTSISH ENQWRYYLVQ
PADLVFHDLG TYQNTYVFII ILTLLFCLIM IFILSKRNVK PIIAINSELQ DSLNEKSNLK
QELEEQRPII YNSYMARIMK GLISNQEEYD KISEFLDLKI GDYRYSVLYA CLYQDQLEVY
VEEQTNNTDA GWNQKLYKDL IRKYFYQYFG DDILIYESEV NAFAIMLPSP MDQPIEESIA
DVESTFLELH NSLMEDHSIW IYGGLGNRNS YAPYLWKSYQ QAIQAASYVR EGNVFQSYRD
IKRDKTSYYY PFEMAQQLLN FITSGNTKQV QEIFHLIRWE NFECRSLPIT VVKWLLSDIR
NTLLKVRFQI SVSDTNHDAI ESIDLSLQEN KSISILEDIA LNLCSLFEPK ADGNKLIHTI
KEYIKENYKD SSLSLKKISD EFNISESYFS YLFKAETKQN FSEYLELIRM TQAMNLLKTT
DINVSDLYLE TGYNNANSFR RAFKKVHGVA PKTIRDTMSS HNDE
|
|---|
| |