| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cphy_1953 |
|---|
| Symbol | |
|---|
| ID | 5744632 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium phytofermentans ISDg |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010001 |
|---|
| Strand | + |
|---|
| Start bp | 2410384 |
|---|
| End bp | 2411100 |
|---|
| Gene Length | 717 bp |
|---|
| Protein Length | 238 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 36% |
|---|
| IMG OID | 641293049 |
|---|
| Product | helix-hairpin-helix repeat-containing competence protein ComEA |
|---|
| Protein accession | YP_001559060 |
|---|
| Protein GI | 160880092 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG1555] DNA uptake protein and related DNA-binding proteins |
|---|
| TIGRFAM ID | [TIGR00426] competence protein ComEA helix-hairpin-helix repeat region
[TIGR01259] comEA protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.00139923 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAGAAAA AACGTAAAAT TGCAGGTTTT TGTTTGATAT TAGCTCTTAT AATCGCCGGG
GGTATTTATT CAAGTACTGT CTTTGGTGGG AAAGCAGATC CCGAGGTAGT GTTGTTAAAT
GGTGATGGTA AGAAATTGGA GGATCCGAAG TATCCAAAGG ATACTTCGGG AGAATTATCT
GAAATTACTT TAAGAAATGA TAAGGAAGTA AGCAAAGAAA ATATCTCAGA ACAAGACCTG
CTATTAGAGG CTGTAATTCA TGTCTGCGGA GAAGTAAATA ATCCTGGTGT GTATACTCTT
TCAGAAAAAG CAAGAGTTGT AGATGCTATT GAGGCTGCAG GAGGATTTAC GAAGGAAGCA
GCGGAAGATG CTTTTAATCA AGCCGCTTTG ATTACAGATG GACAAAGGAT TTATGTTCCA
AACAAAAAGG AAGTGGAAAC GCTATCCGAT GTAGAAATTG CAGAAGTCGT ATTTTCTAAC
CCGACTGGGA AAGAAAAGAA CGATGAAAGT TCTAATAAAA CAAAAGTCAA TATAAATAAG
GCAACGAAAG AAGAACTTAT GACTATTCCC GGGATTGGAG AAGCAAAAGC GTTAAGTATT
ATCTCTTATC GAACAGAGCA TGGTTTGTTT TCAACCATTG AAGAACTTCA AAATATTTCC
GGAATTAAAT CAGCAGTTTT TAATCGAATG AAAGACTTCA TTACAGTAGG AAAATAA
|
|---|
| Protein sequence | MEKKRKIAGF CLILALIIAG GIYSSTVFGG KADPEVVLLN GDGKKLEDPK YPKDTSGELS
EITLRNDKEV SKENISEQDL LLEAVIHVCG EVNNPGVYTL SEKARVVDAI EAAGGFTKEA
AEDAFNQAAL ITDGQRIYVP NKKEVETLSD VEIAEVVFSN PTGKEKNDES SNKTKVNINK
ATKEELMTIP GIGEAKALSI ISYRTEHGLF STIEELQNIS GIKSAVFNRM KDFITVGK
|
|---|
| |