Gene Cphy_1544 details

Gene Information

• Locus tag: Cphy_1544
• ID: 5744366
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Clostridium phytofermentans ISDg
• Kingdom: Bacteria
• Replicon accession: NC_010001
• Strand: +
• Start bp: 1896045
• End bp: 1897952
• Gene Length: 1908 bp
• Protein Length: 635 aa
• Translation table: 11
• GC content: 39%
• IMG OID: 641292646
• Product: helicase c2
• Protein accession: YP_001558657
• Protein GI: 160879689
• COG category: [K] Transcription; [L] Replication, recombination and repair
• COG ID: [COG1199] Rad3-related DNA helicases

Plasmid Coverage information

• Num covering plasmid clones: 8
• Plasmid unclonability p-value: 0.0592026
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTGTGCAA GAAGAAAAGA ACCCTTTGAT TATAAGAATA AACAAGAATT TCAAGTGAAT 
TTAGTTGAGT GGATTGGTGA TGTGTTGTAT GACCTTCTGC CTGAACATGG TTATGAGATT 
CGAGATGAGC AAATATTTAC AGCTTTTAAA ATTGCAGATG CCGTTTGCAA TAAAAAAGTT 
CATTTAGCGG AGGCAGGGCT TGGAACAGGG AAAACATTTG CCTATTTGCT ATCAGCAATT 
CCTTATGCTC GTTTTACTGG AAAACCCGTA GTGATTGCGT GTGCTACAAC AGCACTTCAG 
GAGCAGCTTG CAGGCTCAGA AGGAGATATT AGAACGCTAT CGAGACTACT TGGATTAGAA 
ATCGATGCCC GGATGGCCAA AGATCCACAT CAGTACATCT GTGATGTTCG AGTGGATGAA 
AATATGGAAG AATTCGGGGC GATGTCTAGT GAAATCAATG AGTGGTTGAG CAATACAAAG 
CTAGGTGAAC GTTCGGAGAT ACCATACATC TCAGATCATG AGTGGAAGAA GATAAAATGG 
GTAGAATATA TGGCTTGCGA TATATGTTCT AGTCGAGGTT TTTGTAAACT TGTGAAAGCA 
AGAGAACAGT ATAGACTTAC AAAAGATTTG CTTATTGTGG ATCATGAAAC ATTCTTTCAT 
GATTTATGGA CACGAGAGGA GCGATTAGCC AATGGGTTGT TGCCCATTCT TCCAGACTAT 
TCCGCGGTCA TTTTCGATGA GGGGCATAAA GTCCTTCTTC CTGCATCCAT GCAAGCAGGA 
CAACAGATTA ATAAGGATGA AATTGATACT ATGATTTCTG ATCTTGAAGA GATACAGGGA 
GCTAGAGCTT CGCTAGCTTC AATAATTACT ACGCTAGAAA ATGCCACAAA TTCATTTTTT 
ACGCAGCTAC AGCAGTCTGT AATAGTAGAA GAAAGCACAG AAAGGGTATC AATTCAAAGG 
AGTGACGCCT TACTAAAGGC TGCAACTACC TTTCGTAAGA CCTTAGACCA TCTTCTTCTA 
GAGATGCAAA TAGAACAAGA ACTATATACT GATTCATTAT CATCGAATCA AATACAGGCA 
TACGAGGGGC AGATAGAAAG AGCAATATGG GCACTAGACA AATTCTGTAG AAATCAGGGG 
AGTAATATAG TTTCTTGGGT AGAACAAAAG GATGGTAGCT TTTGGGTTGT TCCACGAAGG 
ATTGGTGATA TGTTAAATAA ACATTTATTC CAGAAAAAAA TACCAGTAGT CTTTACCTCC 
GCGACCTTAA GTAATAAAGG TGATTTTGAT TATTTTATAA GAACACTCGG GTTAGAAGAG 
CCATCCAAAT CCACGATTGG AAGTCCTTTT GATCTGGAAA ATCAAGTCGT TGTCTACTTA 
CCAAAGACAA CGAATAAAAT TAAGCACTTA GTATCTTTAT TAAATGAGAA CGGTGGACGA 
GCGCTTGTGC TTACCAATTC CTTGCATGAA ACAAAAAAAA TCAGAAGGAA ATTACAAGGG 
TATCACTTCC CATTTGAAAT GATATGGGAA GATACAGGGG AGCGTGGATA TCTTGTCCGA 
GAATTTAGAG AGGAAGAAAC CTCAGTTTTA ATCGGGTCTA ATTTTTGGGA AGGAATCGAT 
GTACCAGGTG AGGCATTGAA TTTGCTAATC ATCTGGGAAC TACCTTTAAA TGTTCGGGAT 
CCTCTCATTG AAATACAACG TAAGGAAGCA AGAGAACAGG GCTTAGATCC CCTTGTTATA 
GTTGATTATC CTGAAATGGT TCTAAAATTA AAACAAGGCT GTGGTAGATT AATTAGAACA 
GAGGAGGATA ATGGAGCAAT CGTTATCCTA GATCCTGTGA TAGGAACTCC TTGGGAAAGC 
TACGTGATGG GAGCGCTGCC TTCGGGTGCA AGAATAGAGA AACAGTGA 

 

Protein sequence

MCARRKEPFD YKNKQEFQVN LVEWIGDVLY DLLPEHGYEI RDEQIFTAFK IADAVCNKKV 
HLAEAGLGTG KTFAYLLSAI PYARFTGKPV VIACATTALQ EQLAGSEGDI RTLSRLLGLE 
IDARMAKDPH QYICDVRVDE NMEEFGAMSS EINEWLSNTK LGERSEIPYI SDHEWKKIKW 
VEYMACDICS SRGFCKLVKA REQYRLTKDL LIVDHETFFH DLWTREERLA NGLLPILPDY 
SAVIFDEGHK VLLPASMQAG QQINKDEIDT MISDLEEIQG ARASLASIIT TLENATNSFF 
TQLQQSVIVE ESTERVSIQR SDALLKAATT FRKTLDHLLL EMQIEQELYT DSLSSNQIQA 
YEGQIERAIW ALDKFCRNQG SNIVSWVEQK DGSFWVVPRR IGDMLNKHLF QKKIPVVFTS 
ATLSNKGDFD YFIRTLGLEE PSKSTIGSPF DLENQVVVYL PKTTNKIKHL VSLLNENGGR 
ALVLTNSLHE TKKIRRKLQG YHFPFEMIWE DTGERGYLVR EFREEETSVL IGSNFWEGID 
VPGEALNLLI IWELPLNVRD PLIEIQRKEA REQGLDPLVI VDYPEMVLKL KQGCGRLIRT 
EEDNGAIVIL DPVIGTPWES YVMGALPSGA RIEKQ