Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cphy_1157 |
Symbol | |
ID | 5742880 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Clostridium phytofermentans ISDg |
Kingdom | Bacteria |
Replicon accession | NC_010001 |
Strand | + |
Start bp | 1463388 |
End bp | 1470152 |
Gene Length | 6765 bp |
Protein Length | 2254 aa |
Translation table | 11 |
GC content | 39% |
IMG OID | 641292262 |
Product | nucleic acid binding OB-fold tRNA/helicase-type |
Protein accession | YP_001558274 |
Protein GI | 160879306 |
COG category | [R] General function prediction only |
COG ID | [COG3889] Predicted solute binding protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAAAAAA ATGCAAAACG GTATTTGGCA GTGCTATTGA GTATCATAAT GGTATTCTCA ATAAGTCCTG TCAAAAGTTA TGCAAATGAG GCTGCTAGCA CTTTTGTGAG AATAAATAGT GCAGCAGAAC TTACTACAGA TAAGTATGTA ATGGTAGTAA ATACTGGATA TGCAGTGGGG GCCCTGGATA GTGGATGGCT TGGTTCTACT CAAGTTAGTT CTATGGATGA CAAGGTAATT AATCCAGGCA GTTCCTTGGT ATGGGACCTT TCTGTTTCAG GGACAAGTGT TACTTTAACT GATGCAAACG GAAAAAAGGT TAAGCCATCT GGTGGTAACG CTAATGGAAT AGCTGAGGGA GGCTATGCAT GGGCGTTTGA ATTTAATAAC GGAACGTTTA GATTTAAGGG AACCGGAGCA GATACCGTGA CTTTAGCTAG TAATAAAGGC TCTGATAACA AGTTTAGGGC TTATAAAAAT GATACGGTAA CAGGTTCACC AGCGGGTTAT CCTTCTAATT TTACTCTGTA CAAGTTAGAT AGCGGTAATC CGTCAGGACC TGTAAAAGTA GCAACACCGC AAGCAAGCCC GGCATCTGGA GCAGTCGTTT CCGGAAGTGT TATTACACTT TCCTGCGGAA CACCGAGTTC GAGCATTCAG TATCGAGTTA CGACTGTTTC ACCTTCTGCG ATTTGGGTGG ACTACGCAGA TCCTATCATA ATTAATGGTG ATACAACAAT TGAGGCAAAA GCAACAGCAC CGGATTATGA AGAAAGTGAT ATCGCTGTAT TTCATTATGT GATTTCTGAG GATCCAGTAG ACCCAGAAAT ATTTGATCCG ATTCCTGTAA TTCCGGAAGG TGCAATATCG GTATTAGAGG CAAGTAAACT AAGCAGCGGT CAAGTTACTA TAGTGGGACA GCTTGTTTAC CGGTACGGTG ATTATGACAA GGTAACGACT GTGATTCTGG AAGATGTCAT TGATGGGAAA ATTTATGCAC TGCAGATATA TAATACTCTA TCCGAGTATA AGATTGGTGA TGTTGTAAAA CTAACAGGAA CAATGGGAGC ATATGGGGGA GTTCCTCAGT TAACCAACCC TACAAAAATA GAAATACTCA CACCGGCAGC AGATACTCGG TTGATTCCTG CACAGAAATT CACTTCATTT AATGATTTGA TGGCTGTAAA GGATTCCTTG CTATCGGAAT GGGTGTTAAT TAAGGGTGTA ACACTTGGTA CCTATAGCAG CACCGCAAGC ACAAAGGTTA CGGACAGCTA TGGAGGTAGC ATGGATATAT ACCGTGCAGC GACCTATCCA AGCGGCGTAA CAGCCGGAGA AAAGGTTGAT TTGTATGCAT GTGTATCCAA ATATACTACG ACTGATCAGC TTCGTGTCGG TTCCAGCACT GATTATGTTG TAGCAAATGA TACGAAAGTT CCAACGATAA CAATGCCTAC TTTTGAGAAT GCGGAGTTAG GAATAGATTA TAAGATATCA ATAACAATTA CAGATAATGT AGCAGTATCC GATGCAGATT TAACCTATAC AGTGAATCAG GTATCTACTA AGGTGGCATT GGTACAGAGT ACAACTGATA ACACGAAATG GGAAGCAACC ATTCCTGGAG GCACATTTAC TAAAGATGTT TCCAGCTTTA CCGTTTTTGT AACTGCCAGA GATAGGGCAG GAAATGAGGC TACCAGTGAC GTAAAAACAA TTTCTGTAGC AGACGCACCT CAGGTTACGA AAGTAACACC TGACCGTAAT GAATATACAG GGGTTGAAAA GAGACCGCTT ATTAGCATAA CTGCAACTAA TCTTGGAACG GCTCCAACCG CAAAGCTTAC ACTAAAGACA GGAGCGACGG TTATATTAGA CGCTGCCACT ATGAGTTATT CTGGCGGAAC CTTTTCCTAT AAGCCATCTA AGGATCTGGC TGATGCATCT TATACAGCAT CCGCAGTGAT TACCCGTGCA GATGGAAAAG CCATAACCTA TGAGTGGCCA TTTACCGTAG GTACGCCAAA TTATAAATTA TACTTTGGAC AATTACATAG TCATACAACT TATTCGGATG GTTCTGGCTC TTTAGATGAA GCACTTAATT ATATTAATAA AATTAGCAAG GGTGATAATA TTGATTTTGT TGCATTTACA GATCACTCAA ACTATTTTGA TAAATCGGGT GCGGCTAACC CAGAAGCTTC ACTTTTTAAT AAGAGCTTAA TGACGGCAGA AAGCCAAAAA ATATGGAATG AATACAAGAG TAAAATTGCT AATTTTAATG CATCTCCAAC AAACAGAGGA GTGATTGCTC TCGGTGGTTT TGAAATGACT TGGTCTGGCG GACCGGGACA TATGAACACC TGGAACACAG AAGGTATTGT CAGCCGTAAT AACGCAACCT TAAACAGCAA AACTAATGAT GCCGGAATGA AAGCTTATTA TGCTTTATTA AGCAAACCGG AAGGTGTTAA TAGTGTTAGC CAGTTTAATC ACCCAGGTAA AACATTTGGT ACCTTTAGTG ATTTTGCTTA CTGGGATCCT GCTGTTGATT CCCGTATTAC TTTACTTGAA GTTGGTAATG GAGAAGGTGC AGTCGGCAGC GGCGGATATT TCCCATCCTA TAGTTATTAC ACCATGGCAT TGGATAAAGG ATGGCATGTA GCGCCTACAA ATAATCAGGA TAATCATAAG GGTAAATGGG GAAATGCAAA CGATGCCCGT GATGTTATAA TTACCGGTGA CTTTACGGAA CAGGGTATTT ATGATGCATT AAAGGCTCGT AAAGTATATG CTACGGAATG TAAGAATTTA GAGATTACCT ATACTTTAAA TGGTGAATTA ATGGGAAGCA TCATAAATGA GGTACCTAAG AGCCTCGATT TAAAGGTAAT ATTAAATGAT GCGAAAGATG TAATTCAAAC AGCAGAGGTA ATTGCAAACA GCGGACGTAT TATCCATACA TGGGATGTAA ATGCTCAGAG TAAGGAACTT AGCGTAACAC TGAAACCGGA CTATAGCTAC TATTATATCA GAGTAAGAGA AAAGGATGGA GACATTGCAG TAACGGCACC AGTATGGGTT GGCAGTACAA AATTGCTTGG AATTTCTAAT GTAGAAAGTA GCACAAATAC ACCAGTTACC GGAGAAAAAA TGACGGTTAT AACAACCTTG TTTAACAATG AGTCTGCAGA TGCAACGATT AAATCTTTGA CTTATAAGTT GGATGGAACT GTTATTGATC ATAAAACGGA TGTAGGTAAA ATTGCAAAAG GAACGACTGT TACAAACAAT TATGATTTCA CACCTGAAAA AGCCAAAATG CAAACCATAA CCGTTGAGGC TGTTCTAGCA ATTGGTGGTC TTGACTATGC CTTTACAAAG GATCTTAGTT TAGATATTAG AGATGCGAAT AAACTGGTAT ACATAGGAAT TGACGGAAGT CACTTCAATG AATATGTAGC TGGAAATTAC AAAGATAACA TGGGTAACTT CAGCTTGCTT GCAGCACAAA GCAATGTAAG GTGCGTAATT CTGAATACTA GTGATGAATT AATAGCGGCA GCTAAAAATA CAAATGGTAA ATATAAGATG CTTATATTAA CAGCACCAAG TCGCCGAAAT GGTACTGCGT TAAGAGAACC ATATGCTACA TATTCAGATA AAGAAATAGA AGCCATTAAA GGTTTCTCAG AAGCAGGCGG AAGTTTAATA CTCTGCGGAT GGTCAGATTT ATACGAAAAT TACAAACAAT TCCCGGCACA AGACCATATG GCAGCACAAC AGAATAAGTT ACTAAAAGCA ATTGGAGCGT CTTTACGTGT CAGTGATGAC GGTGCTTATG ATGATGTATT AAATGCAGGC GGAAGTGAAG CAAATAAAGC AAGACTATAC TTAACAACTT ACAATTGGAA TAATCCATTT ACAAAAGGTA TTGTATACGA TGCGGCGAAT CCAAATGATA ACAAGTACAC ACAGCTCTTC AGTCAGTATG GTGGCAGTAC AATTCATGTG GTAGATAAGA ATGAAAAACC TATTTCTACA TTACCAGCTA ATGTCTCACC TATAGTATAC GGACATAGTT CTACCTACTC AAAGGATTGT GATAATGACG GTCTAGGCGG GAGTGCTATT CCAAAATATG AATATGCAAA AGGTGATAAT CGTCTGATGG TGCTTGCCAG CGAGATTGTT ACACATGCTA ATGGAACTCA GTCACTGGTA ATTGTAGACG GTGCAGCATT TATGAGTAAC TTTGAAATTC AAGCTACAAT TTCAGATACC AACGCTGAAT TAAATTACTC AAACTATACA ATTTTACAGA ACGTAATCAA GTATGTAAAT CCGACTCAAA TTGATAAGAT AGTGGATATA CAAAAAGAGT CTGAAGAAGG TGTTAAATTT ACGGTAGAAG GTATCGTAAC CTCCAATGCT TCCGGATATG ATAAGGCTAC AGCATTTTTT GACTGTATCT ATCTACAGGA TGAAACAGCT GGTGTTAATG CATTCCCAGT GGCAGGAGAC TTTAAAGTTG GTCAGAAGGT TCGTATTACG GGAACAACGT CTTCTTATCA GGGCGAAAGA CAGTTAAATG TTAGCAGTAT ATCCTTGGTA GATAGTAGTA TTACAAAAGT AGAACCTAAA GAAGTAACTG CAAAGGAGAT TAATGACAGA ACATACCTTG GAAGCTTTGT AAAGATTTCA GGAAAGGTTA CAAAGATTGA ACTTGCAAAC GGAGCTGTAC AAACGATTCT TGTTCAGGAT GACGCAGGAG ACATTGCTCG GATATTTATT GACGGTTATA TTACAACCGA CAAGGAAATT GAGGATTTAG CAGTTGGAAG TTTGATTACT GCTGTTGGTC TGTCCTCTTA TGATAATACC TTTGATGGTC TTGCAGCGCG TATTCGTATT AGAGATCGTG GGGATATTGT ATGTAAGCGT GATGAAATAC CAACACCAAC GCCAACACCA ACGCCAACAG AAACACCAAC ACCAACGCCA ACAGAAACGC CAACAGAAAC ACCAACACCA ACAGCAACAC CAACACCGAC AGCAACACCA ACGCCAACGA TTGATAAGAT AGTGGATATA CATAAAGCAG AAGAAGGTGC TAATTTTACG GTAGAAGGTA TCGTAACCTC CAATACTTCC GGATATGATA AGACTACAGC ATTTTCTGAC TGTATTTATC TACAGGACGA AACAGCTGGT ATTAATGTAT TCCAAGTGAC TGGAGACTTT AAAGTTGGTC AGAAGGTTCG TATTACAGGA ACAACTTCTT CTTATCAGGG TGAAAGACGG TTAAATGTTA GTAGTATATC TTTGGTAGAT AGTAATATTA CTAAAGTAGA GCCTAAAGAA GTAACTGCAA AGCAGATTAA TGATAGCACA TACCTTGGAA GCCTTGTAAA GATTTCAGGA AAGGTAACTA AGATTGAACT TGAAAACGGA GCGGTACAAA CGATTCTTGT TAAGGATAAC GTAGGAAATA TTGCTCGTAT CTTTATTGAC AGTTATATTA CAACCGACAA GGAAATTAAG GATTTAGCGG TTGGAAGTTT GATTACTGCT GTTGGTCTGT CCTCTTATGA TGATACCTTT GATGGTCTTG CAGCGCGTAT TCGTATTAGA GATCGTGGGG ATATTGTATG TAAGCGTGAT GATACACCAA CACCAACGCT GAAACCAACA CCAACACCAA CAATACCTAC AACGCCAGAA ACACCAACAA CACCTACAAC GCCAACAACG ACGCCAACAC TAACGCCAAC ACCGAAGCCT GAGGGTAAAA CTGTAATAAC AGCTGATAAA GCAGAAATTA CCATTGAGGG TGGAAAAGTA ATTGTAAAAA TAAAAATTGA TGAAGAAGTT CTGAAAGATA CGGTAAAAGA CGGTAATAAA AACATTACAA TTTCATTAGG TAAAGAAGTA TTAAAGGATA TTTTAACGGA TAGTCAGATT AAAATAGGTA TTGTAATCGA CTTGTCCATT CCTACTGTTA AAGATGCAAC TGTGAATAAT ATTGTATTAA GTAAAGATGC ATTGTTATTA GCAAAGAAAT CTGGACAGAA GCTTACTATC AATGTAGCAA TTGGAAAGAG TTACACAGTT GATATTCCTG TATCTGAACT GAAGAAAGTT GCATTTGTTT CAAAAGATCT GAATATAGCA GTTACTTTGA AGAAAGATAC GAAAGCAGCT ACAAAATCTG TAGGAGTCCT TTCTGTAGGA ACGGAAGGTA AGTTATCAGC AGGTATGGTA ATTACAGTAC CTGTAAAAGG TGCACTTTCC TTATCAGCAG GTGACAAGGT ATATATTTAC CATAAGAATG CTGAGACCGG TGTATTAGAA GAAATGCCAA ACAATCCAAT AACTGTAGCA GCGGATGGTA CCTTAAAACT TTCTACCCTA AGCGGAGGAG ATTTTGTTAT TTGCACAGAG AAGGTAAAGG ATGCAGTTAC ATTAGTAGAC AGAGTGAAAG TATCCGTTGA ATCTACCGTT GCAAATGGTA AAAAAATCAA TGTAAAGGTA ACTCTTCCAC AGGAATTAGC ACGAGTTACT TCATTTACAA AAGGTGATCC GGTTGGTCAG GAAGAAGTAA AGGTAACATA TAAAGTAAGC GATAAGAATA TTGCAACTGT ATCCAGTAAT GGAACCATTA CTGCTAAGAA GAAAGGAACT GTTACGTTAA CAGTTGAAGT CACTTTAGAG AATGGACAGA AGAAGAACTT TAGCAAAACT ATCAAAGTAA ACTAG
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Protein sequence | MKKNAKRYLA VLLSIIMVFS ISPVKSYANE AASTFVRINS AAELTTDKYV MVVNTGYAVG ALDSGWLGST QVSSMDDKVI NPGSSLVWDL SVSGTSVTLT DANGKKVKPS GGNANGIAEG GYAWAFEFNN GTFRFKGTGA DTVTLASNKG SDNKFRAYKN DTVTGSPAGY PSNFTLYKLD SGNPSGPVKV ATPQASPASG AVVSGSVITL SCGTPSSSIQ YRVTTVSPSA IWVDYADPII INGDTTIEAK ATAPDYEESD IAVFHYVISE DPVDPEIFDP IPVIPEGAIS VLEASKLSSG QVTIVGQLVY RYGDYDKVTT VILEDVIDGK IYALQIYNTL SEYKIGDVVK LTGTMGAYGG VPQLTNPTKI EILTPAADTR LIPAQKFTSF NDLMAVKDSL LSEWVLIKGV TLGTYSSTAS TKVTDSYGGS MDIYRAATYP SGVTAGEKVD LYACVSKYTT TDQLRVGSST DYVVANDTKV PTITMPTFEN AELGIDYKIS ITITDNVAVS DADLTYTVNQ VSTKVALVQS TTDNTKWEAT IPGGTFTKDV SSFTVFVTAR DRAGNEATSD VKTISVADAP QVTKVTPDRN EYTGVEKRPL ISITATNLGT APTAKLTLKT GATVILDAAT MSYSGGTFSY KPSKDLADAS YTASAVITRA DGKAITYEWP FTVGTPNYKL YFGQLHSHTT YSDGSGSLDE ALNYINKISK GDNIDFVAFT DHSNYFDKSG AANPEASLFN KSLMTAESQK IWNEYKSKIA NFNASPTNRG VIALGGFEMT WSGGPGHMNT WNTEGIVSRN NATLNSKTND AGMKAYYALL SKPEGVNSVS QFNHPGKTFG TFSDFAYWDP AVDSRITLLE VGNGEGAVGS GGYFPSYSYY TMALDKGWHV APTNNQDNHK GKWGNANDAR DVIITGDFTE QGIYDALKAR KVYATECKNL EITYTLNGEL MGSIINEVPK SLDLKVILND AKDVIQTAEV IANSGRIIHT WDVNAQSKEL SVTLKPDYSY YYIRVREKDG DIAVTAPVWV GSTKLLGISN VESSTNTPVT GEKMTVITTL FNNESADATI KSLTYKLDGT VIDHKTDVGK IAKGTTVTNN YDFTPEKAKM QTITVEAVLA IGGLDYAFTK DLSLDIRDAN KLVYIGIDGS HFNEYVAGNY KDNMGNFSLL AAQSNVRCVI LNTSDELIAA AKNTNGKYKM LILTAPSRRN GTALREPYAT YSDKEIEAIK GFSEAGGSLI LCGWSDLYEN YKQFPAQDHM AAQQNKLLKA IGASLRVSDD GAYDDVLNAG GSEANKARLY LTTYNWNNPF TKGIVYDAAN PNDNKYTQLF SQYGGSTIHV VDKNEKPIST LPANVSPIVY GHSSTYSKDC DNDGLGGSAI PKYEYAKGDN RLMVLASEIV THANGTQSLV IVDGAAFMSN FEIQATISDT NAELNYSNYT ILQNVIKYVN PTQIDKIVDI QKESEEGVKF TVEGIVTSNA SGYDKATAFF DCIYLQDETA GVNAFPVAGD FKVGQKVRIT GTTSSYQGER QLNVSSISLV DSSITKVEPK EVTAKEINDR TYLGSFVKIS GKVTKIELAN GAVQTILVQD DAGDIARIFI DGYITTDKEI EDLAVGSLIT AVGLSSYDNT FDGLAARIRI RDRGDIVCKR DEIPTPTPTP TPTETPTPTP TETPTETPTP TATPTPTATP TPTIDKIVDI HKAEEGANFT VEGIVTSNTS GYDKTTAFSD CIYLQDETAG INVFQVTGDF KVGQKVRITG TTSSYQGERR LNVSSISLVD SNITKVEPKE VTAKQINDST YLGSLVKISG KVTKIELENG AVQTILVKDN VGNIARIFID SYITTDKEIK DLAVGSLITA VGLSSYDDTF DGLAARIRIR DRGDIVCKRD DTPTPTLKPT PTPTIPTTPE TPTTPTTPTT TPTLTPTPKP EGKTVITADK AEITIEGGKV IVKIKIDEEV LKDTVKDGNK NITISLGKEV LKDILTDSQI KIGIVIDLSI PTVKDATVNN IVLSKDALLL AKKSGQKLTI NVAIGKSYTV DIPVSELKKV AFVSKDLNIA VTLKKDTKAA TKSVGVLSVG TEGKLSAGMV ITVPVKGALS LSAGDKVYIY HKNAETGVLE EMPNNPITVA ADGTLKLSTL SGGDFVICTE KVKDAVTLVD RVKVSVESTV ANGKKINVKV TLPQELARVT SFTKGDPVGQ EEVKVTYKVS DKNIATVSSN GTITAKKKGT VTLTVEVTLE NGQKKNFSKT IKVN
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