| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cphy_0064 |
|---|
| Symbol | |
|---|
| ID | 5744991 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium phytofermentans ISDg |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010001 |
|---|
| Strand | - |
|---|
| Start bp | 89917 |
|---|
| End bp | 90717 |
|---|
| Gene Length | 801 bp |
|---|
| Protein Length | 266 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 35% |
|---|
| IMG OID | 641291153 |
|---|
| Product | XRE family transcriptional regulator |
|---|
| Protein accession | YP_001557193 |
|---|
| Protein GI | 160878225 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1298] Flagellar biosynthesis pathway, component FlhA |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 40 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGATTATC AGAGATTTGC AGCAAAATTA TTAAAACAAC GTCAACAATT ACAATTAACC
CAAGAAGAGT TGGCATTGCG TGTTGGCGTG ACACCTCAAG CTATCTCTAA GTGGGAGCGA
GGAATTAGCT TACCAGACAT TGAGCTCCTA TACCAGCTAA GTAAAGTACT ATCTCTTTCT
ATGGATGAGC TATTAGATTT ACCAACCTCA TTAACAGAAT CCGATAATGA TAAAGATAAA
GAACGTCTTT TTCGTGCTAT TCTCTCGGAG CCAATTACCC TTAAGGTTGG ATGTGGCTTC
GTAGATTATC TTATGAAAGA GAATCAGCAG GGTTTTCCAA AACTTCAACA GGTTCGAATC
AATATGGCAA AAGAAAGCGG ATATCTGTTA CCAACAGTAC GGATTTTAGA TGACATTACA
CTGGATAATC ACTGCTTTCA GATACTTTTT TATGATAAGG TTGTCTATGA GCAGAATAAC
TTAAATCCTA GCAGTTCAGA ATATCCAGAA ATTTTTGAAC AGCTCAATCT AACATGTACC
GCTCATTATG AAAAACTTCT TCATCGTCAA ATAGTGAAAG ATTTAATTGA TAATTTGTCG
AAACTTTACC CTGTCCTCGT GGACGGCTAT ATCCCAGATA AATTATCCTA TGCTCAGATA
CAATTTGTAT TAAAGTCATT GATTGAACAT AAGAAAAGCA TCCGTAATCT GTGTGAAATC
ATAGAATATT TGGAAGATAA TCTGGTACTT GGCAAAGATC TAGTTTCTAT TTCAAATGAA
TTAATCCAAC TATCATATTA A
|
|---|
| Protein sequence | MDYQRFAAKL LKQRQQLQLT QEELALRVGV TPQAISKWER GISLPDIELL YQLSKVLSLS
MDELLDLPTS LTESDNDKDK ERLFRAILSE PITLKVGCGF VDYLMKENQQ GFPKLQQVRI
NMAKESGYLL PTVRILDDIT LDNHCFQILF YDKVVYEQNN LNPSSSEYPE IFEQLNLTCT
AHYEKLLHRQ IVKDLIDNLS KLYPVLVDGY IPDKLSYAQI QFVLKSLIEH KKSIRNLCEI
IEYLEDNLVL GKDLVSISNE LIQLSY
|
|---|
| |