| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cphamn1_2543 |
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| Symbol | |
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| ID | 6376241 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chlorobium phaeobacteroides BS1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010831 |
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| Strand | - |
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| Start bp | 2714988 |
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| End bp | 2718200 |
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| Gene Length | 3213 bp |
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| Protein Length | 1070 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 642685021 |
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| Product | type I site-specific deoxyribonuclease, HsdR family |
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| Protein accession | YP_001960918 |
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| Protein GI | 189501448 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0610] Type I site-specific restriction-modification system, R (restriction) subunit and related helicases |
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| TIGRFAM ID | [TIGR00348] type I site-specific deoxyribonuclease, HsdR family |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.111804 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTGATT TTCAGATAAA CGAAAAACAT CTGTCCCAGA TTCCTGCTTT GCAGCTGCTG
ATCGGGCTTG GCTATGAATA CCTGACTCCG GGCGAAGCAC TCCTTGAACG GCAGCAGAGG
ATGTCCAATG TGCTGCTGGA AAATGTTCTG CGAAATCAAC TGAAGGCGAT TAACCGAATC
AACTTCAAGG GTGGCGTGTA TCTGTTCAGC GAGGAGAATA TTCAGTCGGC CATCCAGAAA
CTCAAGAATA TCAAGTACGA CGGTTTGCAG AAAACCAACG AGGCTGTCTA CGATCTCATC
ACCCTCGGGA CAGCCATGGA GCAGACTATC GAGGGTGACT CGAAGAGTTT TACTCTGAAT
TATGTTGATT GGCGAAATCC CGAGAGGAAC GCATTTCATG TGACGGTTGA ATACAGCGTC
GAGCGGTCCC GGAGCACGGA AACGGTCCGG CCGGATATCG TTCTCTTCGT AAATGGCATT
CCTTTCTGTG TTATCGAGTG TAAGTCCCCG CAGATCGAAG TCGATCAGGC TGTTTCCCAG
TCGATCAGGA ACCAGAACGA CGCCTATATC CCGAAGCTGT TTGTCTATAC GCAGTTGCTA
CTGGCGCTCA ACAAGAACAG AGCCATGTAC GCGACAACAG GAACGGCTGT CAGGTTCTGG
AGCGTCTGGA AAGAGCCGGG GTTAACCACG GATGATGAAA CCACGAAAGA CACGAAAAGC
ACGAAACTGA AAGAGCTGGA GAGGTTGATT CAGGAATCGT TGGACTATCG GGTTGACCCT
GATGATTTTT CTTTGTCTTC CGTGCTTTCC GTGGCTCAAA ACCTAAGAAT AGTTACGGAG
CAGGACAAGT CTCTCTATGC TCTTTGCCGC CCGGAAAGAC TTTTGGAACT GGCATGGAAG
TTCACAGTTT TTGACGGAGG ATTGAAAAAG ATCGCCCGGT ATCAGCAGTA CTTCGTCATC
AAGTCCACGC TGAACCGTGT CAAACAGTTC GCCTACAGCG GTTCCCGCAA GGGCGGGGTG
ATCTGGCATA CGCAAGGGTC GGGAAAATCC CTGACCATGG TTATGCTGAC GCGCAATCTG
GCCCTCGATC CGGAAATATC GAATCCTCGT ATCGTTCTCG TTACTGACAG GGATGATCTG
GACAAGCAGT TGGGAAATAC TTTCGCGGCC TGCGGCCTCG AAGCCAATCG GGCGACTTCC
GGCAGGAATC TGCTCGAACT GGTGGCGGAA AAGCAGTCAG GAATTGTCAC GACGCTCATT
CATAAATTCG ACAAGGCCTA TGCCGTCAAC AAGTATCGGG ACGAGTCTTC CGATATCTTC
GTGCTCGTTG ACGAGAGTCA CCGTACTCAG TTCGGCTCCT TTGCCGCCCG TATGCGCCAG
ATGTTTCCCA ATGCCTGCTA TCTTGGTTTC ACGGGTACCC CGCTTCTGAA AAAAGAGAAA
AACAATTTTA TCAGATTCGG AGAACTGGTA GAACCTCATT ACTCTATTTC GCAGGCGGTG
GAAGACGGCG CGGTCGTTCC GCTTTTATAC GAGGGGCGGC ATGTTGAGAT GACCCAGAAC
AGGGCGGCTG TGGATCTGTG GTTCGAGCGT CATACCCAAG GGTTGAGCAA GGAGCAGCAG
GCGGATCTGA AACGCAAATA TGCTCGTGCT GAAATGCTGA ACAAGGCAGA TCAGGTCATT
TACATGAGGG CCTTCGATAT CAGTGAACAT TTCCGGGCCA ATTGGCAGGG AACCGGCTTC
AAGGCACAGC TTGTTGCGCC CGGCAAGGTT TCCGCGTTGA AATACCAGGA GTATTTGAAT
GATATCGGCA TGGTCGGTTC CGAGGTCGTC ATTTCCCCTC CTGATATGCG TGAAGGTTTC
GAGGAAACGG ACGATGAATC CAACGATGAG GTGGTGAAGT TCTGGCAGAA GATGATGAAG
CGGTATGGAA GCGAAGAAGA GTACACCAAG CAACTCATCA ATCAGTTCAA ACACGGCAGC
GATCCTGAAA TCCTGATTGT CGTCGACAAA CTACTGACCG GTTTTGACTC CCCCCGAAAT
GCCGTACTCT ATCTATGCCG TGTTCTCAGG GAACATACTT TATTGCAGGC CATTGCACGG
GTCAACCGGA TTCATGAAGG TAAGGAGTTC GGCTTTATCG TCGATTATGC AAATGTACTT
GGCGAACTTG ATAAGGCCCT AACGATGTAT AGCGCGTTTG AAGGGTTCGA CGAATCGGAT
CTTGTCGGCA CATTGACCTC GATCAACAGC GAGATTGAAA AACTGCCAGA CCGTCATTCG
GATTTGTGGG ACCTCTTCAA GACCGTCAAA CATTCATACG ATGAAGAGGC GTATGAGCTT
TTGCTTGCCG ATGACCAACT CAGGGAAGAG TTTTATACCC GTCTTGCCGA ATTTGCCAAA
ACCCTCGCTA TCGCGCTCTC ATCCGAAAAG TTTTTAACTG AAACGGAGGA TAAAACGCTT
TCCAGATACA AGTCGGATCT CCGGAAGTTC CAGTCTCTGA AGGTCGCCGT AAAACTCCGC
TATGCTGAAT CTATCGATTA CCGCGATTAT GAGCCGAAAA TCAAAAAATT GCTCGATACC
CATATTCAGG CAGACGAGGT TATCCAGCTT AACGAGCCGG TGAACATCTT TGATGAGCAT
ATGTTCAACC AGGTCAAGGA AGAGCAGGGT GTTTATCAGG ATAAAAAAAC GACGGGCTCA
AAAGCAGATA CGATTGCTCA TGCAACGAAA AAAGCGATCA CGGAAAAGAT GGATGAAGAT
CCTGCGTTTT ATCAAAAGTT CTCGCTGCTC ATCCAGCAGG CAATCGAGGA TTTTCGGGCA
AAACGGATAT CTGATCTGGA GTATCTGCAG CAGGTTGTCG ATATCCGGAA CAAGGTTGTC
GGCAAGGTAC ACGATGATGT CCCGGACATC CTTTCAGGTA ATGAGGATGC CATGGCCTGC
TATGGTGTGC TGAAACCCTT CTTCGAAGAT CATGCTCCGG GTCTTGAACC CGTCGTTGCA
GATACGGCAA TTGCCATCTA TGACATTCTG GAAAAACACA AGAAAGTTCA TTTCTGGGAT
GATGAAGATG CCCAGAAACA GGCGATCAAT GAGATTGAAG ATTACCTCTA TGACGAGCTG
AAAACGGAAA AAGGTATTGC ATTGTCTCTC GATCAGATGG ATGAGATCAT TGAAAAGGTC
ATGCAGGTTG CCAAACACAG GAGTTACACA TGA
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| Protein sequence | MSDFQINEKH LSQIPALQLL IGLGYEYLTP GEALLERQQR MSNVLLENVL RNQLKAINRI
NFKGGVYLFS EENIQSAIQK LKNIKYDGLQ KTNEAVYDLI TLGTAMEQTI EGDSKSFTLN
YVDWRNPERN AFHVTVEYSV ERSRSTETVR PDIVLFVNGI PFCVIECKSP QIEVDQAVSQ
SIRNQNDAYI PKLFVYTQLL LALNKNRAMY ATTGTAVRFW SVWKEPGLTT DDETTKDTKS
TKLKELERLI QESLDYRVDP DDFSLSSVLS VAQNLRIVTE QDKSLYALCR PERLLELAWK
FTVFDGGLKK IARYQQYFVI KSTLNRVKQF AYSGSRKGGV IWHTQGSGKS LTMVMLTRNL
ALDPEISNPR IVLVTDRDDL DKQLGNTFAA CGLEANRATS GRNLLELVAE KQSGIVTTLI
HKFDKAYAVN KYRDESSDIF VLVDESHRTQ FGSFAARMRQ MFPNACYLGF TGTPLLKKEK
NNFIRFGELV EPHYSISQAV EDGAVVPLLY EGRHVEMTQN RAAVDLWFER HTQGLSKEQQ
ADLKRKYARA EMLNKADQVI YMRAFDISEH FRANWQGTGF KAQLVAPGKV SALKYQEYLN
DIGMVGSEVV ISPPDMREGF EETDDESNDE VVKFWQKMMK RYGSEEEYTK QLINQFKHGS
DPEILIVVDK LLTGFDSPRN AVLYLCRVLR EHTLLQAIAR VNRIHEGKEF GFIVDYANVL
GELDKALTMY SAFEGFDESD LVGTLTSINS EIEKLPDRHS DLWDLFKTVK HSYDEEAYEL
LLADDQLREE FYTRLAEFAK TLAIALSSEK FLTETEDKTL SRYKSDLRKF QSLKVAVKLR
YAESIDYRDY EPKIKKLLDT HIQADEVIQL NEPVNIFDEH MFNQVKEEQG VYQDKKTTGS
KADTIAHATK KAITEKMDED PAFYQKFSLL IQQAIEDFRA KRISDLEYLQ QVVDIRNKVV
GKVHDDVPDI LSGNEDAMAC YGVLKPFFED HAPGLEPVVA DTAIAIYDIL EKHKKVHFWD
DEDAQKQAIN EIEDYLYDEL KTEKGIALSL DQMDEIIEKV MQVAKHRSYT
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