Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cphamn1_1826 |
Symbol | |
ID | 6375517 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Chlorobium phaeobacteroides BS1 |
Kingdom | Bacteria |
Replicon accession | NC_010831 |
Strand | + |
Start bp | 1980462 |
End bp | 1982441 |
Gene Length | 1980 bp |
Protein Length | 659 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 642684323 |
Product | 1-deoxy-D-xylulose-5-phosphate synthase |
Protein accession | YP_001960225 |
Protein GI | 189500755 |
COG category | [H] Coenzyme transport and metabolism [I] Lipid transport and metabolism |
COG ID | [COG1154] Deoxyxylulose-5-phosphate synthase |
TIGRFAM ID | [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.570269 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGAACAAT TCCATCCGGT TCCGCCAAAC GGCAAATACC CTTTTCTTTC AGCAATTGTT TCTCCAGAAG ACCTGAAAAA ACATACCATC CATGATCTTC AGAAAATTGC GGATGAATGC AGGTCATATC TTATCGATGT AGTGGCTGAG AACGGCGGGC ATTTCGGCTC GAGCCTCGGT GTCGTAGAGA TGTCTGTGGC CATGCACTAT GTCTACAATT CCCCACACGA CAAAATAATA TGGGATGTCG GCCATCAGGC CTATATCCAC AAGATCCTGA CCGGCAGAAA AGAGCTGATG CACACAAACA GGAAATTCAA TGGCCTTGCC GGTTTCCCGA AAATCTCTGA AAGCGCTCAT GACGCCTTCG GTACCGGCCA TGCATCGACA TCCATTTCTG CCGCGGCGGG AATAGCGGCG GCAAAAAAGC TGTCAGGAAG TAACGACAAG GTTATTGCCG TTATCGGTGA CGGAAGTATG ACCGGAGGAA TGGCATTCGA GGCAATGAAC CACCTCGGAG ATATCAAAAG CGACGTTCTT GTTGTTCTGA ACGATAACCA GATGGCCATC TCCCCAAGCA CCGGAGGATT GAAAAATTAT CTTGTCAACA TCACCCTGAA CAAAACATAC AACAAGGCCA GGAAATTCAT CTGGGACTCT CTCTCTCTGC TCAATAACGA CCTTGGAGAA ACCGCCAAAA ACGCTGTGCG CAAAATTGAA GACGGAATAA AAGCCGCCCT CACACCCGGT GCTTTTTTCG AAGCTCTCGG GTTCAGATAT TTCGGCCCGA TAGACGGCCA CAACACGGAA CAGCTTGTCA AAGCGTTCAG GGAAATGCAG GAACTGCCCC ACCCGAAGCT TCTGCATATC ATAACGACAA AAGGAAAAGG CTTTAAACCG GCCGAAGACG ATCAGAGCAA GTGGCACGCA AGCAGCGGCG GCTTTGACAT TACAACCGGC AAATCATTGA AAAAATCCGG AATTGCCCAA CCCCCGAAAT ATCAGGATAT TTTCGGCGCG GCATTAGCCG AACTCGCCGA TTCAGACCAC AGGATCACAG GAATTACCGC TGCGATGTCC AGCGGTACCT CTCTTGATAT TTTTCAGAAA GCTCATCCTG AACGTTTCTA TGACGTCGGG ATCGCCGAGC AGCATGCCGT GACATTTGCC GCGGGAATGG CGGCAAACGG CTATAAACCT TTTTGTGCCA TCTATTCCAC TTTTCTGCAG CGCGCCTATG ATCAGCTGAT TCACGATGTC GCCCTTCAGA AACTTCCTGT CGTTTTCGCA ATCGACCGTG CTGGTCTTGT CGGAGAAGAC GGCCCGACAC ATCACGGCTC ATTCGACCTC TCCTTTCTGC GCCCGATTCC CGGTATGGTC ATCATGGCTC CCAAAGACGG ACAGGAACTC CGGGACATGT TGTACACAGC CTCGAAATAT CAGAACGGTC CTGCGGCCAT CCGCTATCCG AGAGGACTCT CTTCAGAAAT CACACTCCGC CCCGGCTTCC GGGAAATCGA AATCGGCAAG GGGAAAATTG TGCGTGAGGG TTCTTCTGTT GCCATTCTTG CGATCGGCAC CATGGTGGAA AGAGCTCTTG AAGCGTCCTT GCTGCTTGAA GAAAACGGTA TTGACGCACT TGTGGCCAAC ATGCGTTTTC TGAAACCTCT CGACACCGCA CTGCTGGATG ACATTGCTGA AACCCACACC GACATAGTGG TACTTGAGGA AAACAGCATC ATTGGAGGGC TTAACAGCGC GGTAAACGAC TATCTGCGCA GCAAAAGGCG TACGAACAAC GTGCTGAGCA TAGGCTTGCC CGACGCATTC GTCACTCACG GCAGCATGAA CGATCTCTAC AGGTTGCTGG AGCTGGATGC GGAAAACATC AGCAGGAAGA TCAGTGCGTT TCACCAGTGC ATGGTAACAG AAAAAAACGA CAGCACCCAG AGCACGATGC GGACAGAAAG ATTGGCATAG
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Protein sequence | MEQFHPVPPN GKYPFLSAIV SPEDLKKHTI HDLQKIADEC RSYLIDVVAE NGGHFGSSLG VVEMSVAMHY VYNSPHDKII WDVGHQAYIH KILTGRKELM HTNRKFNGLA GFPKISESAH DAFGTGHAST SISAAAGIAA AKKLSGSNDK VIAVIGDGSM TGGMAFEAMN HLGDIKSDVL VVLNDNQMAI SPSTGGLKNY LVNITLNKTY NKARKFIWDS LSLLNNDLGE TAKNAVRKIE DGIKAALTPG AFFEALGFRY FGPIDGHNTE QLVKAFREMQ ELPHPKLLHI ITTKGKGFKP AEDDQSKWHA SSGGFDITTG KSLKKSGIAQ PPKYQDIFGA ALAELADSDH RITGITAAMS SGTSLDIFQK AHPERFYDVG IAEQHAVTFA AGMAANGYKP FCAIYSTFLQ RAYDQLIHDV ALQKLPVVFA IDRAGLVGED GPTHHGSFDL SFLRPIPGMV IMAPKDGQEL RDMLYTASKY QNGPAAIRYP RGLSSEITLR PGFREIEIGK GKIVREGSSV AILAIGTMVE RALEASLLLE ENGIDALVAN MRFLKPLDTA LLDDIAETHT DIVVLEENSI IGGLNSAVND YLRSKRRTNN VLSIGLPDAF VTHGSMNDLY RLLELDAENI SRKISAFHQC MVTEKNDSTQ STMRTERLA
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