Gene Cphamn1_1394 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCphamn1_1394 
Symbol 
ID6375072 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChlorobium phaeobacteroides BS1 
KingdomBacteria 
Replicon accessionNC_010831 
Strand
Start bp1509226 
End bp1509984 
Gene Length759 bp 
Protein Length252 aa 
Translation table11 
GC content56% 
IMG OID642683889 
Productshort-chain dehydrogenase/reductase SDR 
Protein accessionYP_001959803 
Protein GI189500333 
COG category[I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only 
COG ID[COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00739159 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.000116023 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGAAACTTT CTGGAAAAAT CGCACTTGTC ACCGGTGCGG CTGGGGGTAT CGGCAGTTCT 
ACCGCACTAT GTCTGGCCGG GGAAGGTGCA ACGGTCGTTC TCTCGGACTG CGATAGGGAG
GGGTGCATTG CCGTTCAGAA TCAGATTCTT GAGTTAGGTG GCTCAGCATC GGTCATTACG
GCCGACGTTA CGAAAGAGCA GGAGGTCGTA GGCCTTTTTG CCGAACTGAA TGCATCTGTG
GGTTCGCTTG ACATCCTTGT CAATATCGCG GGAGGTGATC GGGAACCCGT GGCCGATGTC
GATGCGATCG ATTACGATAG CATGAGCCGC AACCTGGACC TCAATCTGAA ATCATGTATT
CTTTTCTGCC GCGAAGCCGT GCGTGTCATG AGGTCCCGGC GTTACGGGAG GATCATCAAT
ATGAGTTCGC TGGTCTACAG GGGAAGTCCC GGGCAGTTTT CCTACTCCGC CGCCAAAGGA
GGGATTTTCT CTTTTACCCG TTCGCTTGCC ATGGCCGTCG GCAAGGACAA CATAACGGTC
AATGCACTGG CTCCCGCCCT TGTGGACGTG CCTGTTTTCG AACGTGTGCT GGGCGCGGAA
CGCTGGAAGG CGATGTCCTC CGATGCGGCG TCACGCTACC CCATGCAGCG TATCGCGACC
CCTGATGACG TCGCCCGGGC GGCTCTGTTT TTCGCCTCTG ACGACGCGTC GTTCATTACC
GGACAGATTC TTGAGATTTC CGGGGGTGCC AGACTATGA
 
Protein sequence
MKLSGKIALV TGAAGGIGSS TALCLAGEGA TVVLSDCDRE GCIAVQNQIL ELGGSASVIT 
ADVTKEQEVV GLFAELNASV GSLDILVNIA GGDREPVADV DAIDYDSMSR NLDLNLKSCI
LFCREAVRVM RSRRYGRIIN MSSLVYRGSP GQFSYSAAKG GIFSFTRSLA MAVGKDNITV
NALAPALVDV PVFERVLGAE RWKAMSSDAA SRYPMQRIAT PDDVARAALF FASDDASFIT
GQILEISGGA RL