| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpha266_1961 |
|---|
| Symbol | |
|---|
| ID | 4570136 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chlorobium phaeobacteroides DSM 266 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008639 |
|---|
| Strand | + |
|---|
| Start bp | 2274228 |
|---|
| End bp | 2275634 |
|---|
| Gene Length | 1407 bp |
|---|
| Protein Length | 468 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 639766542 |
|---|
| Product | deoxyribodipyrimidine photo-lyase type II |
|---|
| Protein accession | YP_912398 |
|---|
| Protein GI | 119357754 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0415] Deoxyribodipyrimidine photolyase |
|---|
| TIGRFAM ID | [TIGR00591] photolyase PhrII |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.351083 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCTGAAC ATCGGCTGAC ACAAAAACAG AACGCCCTTA TGATTGATCC CCGCCGAACA
AGAGTGTTGA ACTCCTGCAG TGACAAACCG GGAGCGGTTA TTTACTGGAT GTCGCGCGAT
CAGCGCCTGA ACCATAATTG GGCGCTGCTC TTTGCAAGAG AGAAAGCCGC TCGGAAAGGC
CAGCCTCTTG TTGTTGTCTT CGCTCTGGCC CCATCATTCC TCGACGCTCC GTTCAGACAT
TACGACTTCA TGCTTAAAGG TCTTGAAGAA ACCTCCAAAG CTCTCGAACG GATCAATATC
CCCTTTATGC TGCTCGAAGG AGAGCCGGAT ACAGAGATCT CACGATATGC CTGCCAGTCC
GAAGCAGGAG CTGTCGTTAC GGATTTTTCT CCCCTGAACA TTTCCCGAAA CTGGAAAAAA
AAGGCAGCCG ACATCCTCGA CATTCCTCTC TATGAGGTCG ATGCCCATAA CATTGTCCCC
TGCTGGTATG CATCCGACAA ACAGGAGTAT GCGGCCAGAA CCCTGCGCCC GAAACTGCAG
GCCCGCCTTG ATGAGTTTCT TGTTCCGTTT CCAACGATTC TGCCGCTTCC GGCACCTCAC
GTTCACCACC GCTCTCCCGA CTGGAAACAG GTCCGGGAAC GGCTCCAAAA AGATCGCTCC
GTACCGCCGG TGAACCGGAT CGCTCCTGGA GAAACGGCCG CAGCAGAATC GCTTGAAAAC
TTCATCAAGA GCAGGCTTTC GGGATATGCC ACGGCTAGAA ACGACCCGAA CAGCAATGCC
CTGTCACAAC TCTCTCCCTA CCTTCATTTC GGTCAGATCA GTGCCCAGCA TGTTGCGTTG
CGGGTTGCCG AAAGCCGTGC GCCACAGAAA GACAAGACGG CCTTTCTCGA GGAGCTGATT
ATCCGCAGGG AGCTTTCGGA TAATTTCTGC AACTACAACC CGAGCTATGA CCGGTTTGAA
GGGATCCCTG CATGGGCGAA GCAAACGCTG CTTCTTCATG GGCAGGACAA ACGGGAGTAC
CTGTACACCA TCGACGTTTT CGAAAAAGCT GCAACGCACG ACAAGCTCTG GAACGCTGCC
CAATCAGAGC TGGTTCAAAG CGGAAAAATC CACGGTTATA TGCGGATGTA CTGGGCGAAA
AAAATTCTCG AATGGAGTTC GTCTCCTCCC GAGGCATTTG AGATGGCGAT CTATCTCAAC
GACCGATATG CGCTTGATGG AAGGGATCCT AACGGTTATG CTGGGGTGGC ATGGTCGATT
GGAGGCTTGC ATGACCGCCC ATGGTTCGAA CGTCCGGTCT ATGGCAACAT CAGATACATG
AACGCCAGCG GGTGCAGAAG AAAGTTCGAC GTTGAGCGCT ACATAAGCCG GTTTCGGGAA
CCGGCGACAC TGTTCCCGAA TGCGTAA
|
|---|
| Protein sequence | MSEHRLTQKQ NALMIDPRRT RVLNSCSDKP GAVIYWMSRD QRLNHNWALL FAREKAARKG
QPLVVVFALA PSFLDAPFRH YDFMLKGLEE TSKALERINI PFMLLEGEPD TEISRYACQS
EAGAVVTDFS PLNISRNWKK KAADILDIPL YEVDAHNIVP CWYASDKQEY AARTLRPKLQ
ARLDEFLVPF PTILPLPAPH VHHRSPDWKQ VRERLQKDRS VPPVNRIAPG ETAAAESLEN
FIKSRLSGYA TARNDPNSNA LSQLSPYLHF GQISAQHVAL RVAESRAPQK DKTAFLEELI
IRRELSDNFC NYNPSYDRFE GIPAWAKQTL LLHGQDKREY LYTIDVFEKA ATHDKLWNAA
QSELVQSGKI HGYMRMYWAK KILEWSSSPP EAFEMAIYLN DRYALDGRDP NGYAGVAWSI
GGLHDRPWFE RPVYGNIRYM NASGCRRKFD VERYISRFRE PATLFPNA
|
|---|
| |