Gene Coch_2158 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCoch_2158 
Symbol 
ID8368619 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCapnocytophaga ochracea DSM 7271 
KingdomBacteria 
Replicon accessionNC_013162 
Strand+ 
Start bp2574868 
End bp2575497 
Gene Length630 bp 
Protein Length209 aa 
Translation table11 
GC content43% 
IMG OID644984612 
ProductDNA-(apurinic or apyrimidinic site) lyase 
Protein accessionYP_003142263 
Protein GI256820984 
COG category[L] Replication, recombination and repair 
COG ID[COG0177] Predicted EndoIII-related endonuclease 
TIGRFAM ID[TIGR01083] endonuclease III 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAAAAG CTGAAAAAGT AAACTTTATC ATTGATACAC TGGAAAGTAT CTATCCTGAA 
ATTACTATAC CCCTACAACA CAAAGACCCT TATACGCTAC TGATAGCCGT ACTCTTATCG 
GCACAAACTA CCGATGCACG GGTGAACCAA ATCACGCCTA TTCTATTTAG CAAAGCGGAC 
AATCCGTATG ATATGGTACT ACTTTCGGTA GACGAAATAC AGGAGATTAT CAAACCCTTA 
GGGCTTGCCC CTATGAAATC TAAAGGTATT CACGGGCTTT CCCAAATACT CATAGACAAA 
TACAACGGCG AAGTTCCTCA AACCTTTGAG GCTTTAGAGG CTCTCCCCTC AGTAGGACAT 
AAAACTGCCA GCGTTGTTCT TGCACAAGCC TTTGGCATTC CGACCTTCCC CGTTGATACC 
CATATACACC GACTGATGCA CCGCTGGAAA CTTTCCGACG GTAGCTCGGT AGTGCAAACA 
GAGAAAGATG CCAAACGACT CTTCCCCAAA GAAAAATGGA ACAAACTGCA CGTGCAAATC 
ATCTTGTACG GGCGCGAATA CAGTCCGGCG AGAGGCTGGA ATATGGAAAA AGATATTATA 
ACCAAAACCA TTATACAATC GAAAAAATGA
 
Protein sequence
MKKAEKVNFI IDTLESIYPE ITIPLQHKDP YTLLIAVLLS AQTTDARVNQ ITPILFSKAD 
NPYDMVLLSV DEIQEIIKPL GLAPMKSKGI HGLSQILIDK YNGEVPQTFE ALEALPSVGH 
KTASVVLAQA FGIPTFPVDT HIHRLMHRWK LSDGSSVVQT EKDAKRLFPK EKWNKLHVQI 
ILYGREYSPA RGWNMEKDII TKTIIQSKK