Gene Coch_1988 details

Gene Information

• Locus tag: Coch_1988
• ID: 8368449
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Capnocytophaga ochracea DSM 7271
• Kingdom: Bacteria
• Replicon accession: NC_013162
• Strand: +
• Start bp: 2381725
• End bp: 2382414
• Gene Length: 690 bp
• Protein Length: 229 aa
• Translation table: 11
• GC content: 34%
• IMG OID: 644984442
• Product: hypothetical protein
• Protein accession: YP_003142093
• Protein GI: 256820814
• COG category: [L] Replication, recombination and repair
• COG ID: [COG4912] Predicted DNA alkylation repair enzyme

Plasmid Coverage information

• Num covering plasmid clones: 34
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGTAAAG AAATTATTTT AGACCGGTTA TGGGCATTAG AAGACTCTCC TTATAGAGAT 
TTTACAGCGA ATTTGATTCC CACTGTGGAG AAATCTCGTA TTATAGGGGT TAGAACACCT 
GCAATGCGAG CGTTGGCTAA AGAATTAGTA AAACATTACC CTACTGAGGC AATGTCTTTC 
TTAGAAGAGT TACCTCATTA TTATTATGAG GAAAATAATC TACACGGTTT TATCATTGAA 
CAGCTAAAAG ATTTTGATAA AGCGATGCAA TATACAGAGC GGTTTCTCCC CTATATTGAT 
AATTGGGCTA CGTGTGATAC TTTTGCTCCT AAAATCTTCT CGAAATACCC CGAAGAGACA 
TTAAAACACA TCAAACAATG GATTACAAGC AAAGAAACCT ATACAGTACG TTACGGAATT 
GGGTTGTTAT TGTCTAATTA TTTAGATGCT CTTTTTAAGG AAGAATACTT AACCTGGGTA 
GCAAAAATTA CCTCAGATGA ATATTATATA AATATGATGA TAGCGTGGTA CTTTGCTACT 
GCTTTAACAA AACAATATGA AGCAACAATA CCTTATATAG AATCAAAAAC ACTTTCTCCC 
TTTGTTCAAA ATAAGAGTAT ACAAAAAGCA AGAGAAAGCC GTCGTATTTC CGAAGATACT 
AAAAAATATT TGTTGCAGTT TAAACTCTAA 

 

Protein sequence

MSKEIILDRL WALEDSPYRD FTANLIPTVE KSRIIGVRTP AMRALAKELV KHYPTEAMSF 
LEELPHYYYE ENNLHGFIIE QLKDFDKAMQ YTERFLPYID NWATCDTFAP KIFSKYPEET 
LKHIKQWITS KETYTVRYGI GLLLSNYLDA LFKEEYLTWV AKITSDEYYI NMMIAWYFAT 
ALTKQYEATI PYIESKTLSP FVQNKSIQKA RESRRISEDT KKYLLQFKL