Gene Coch_1820 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCoch_1820 
Symbol 
ID8368268 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCapnocytophaga ochracea DSM 7271 
KingdomBacteria 
Replicon accessionNC_013162 
Strand
Start bp2171701 
End bp2174334 
Gene Length2634 bp 
Protein Length877 aa 
Translation table11 
GC content43% 
IMG OID644984262 
ProductTonB-dependent receptor plug 
Protein accessionYP_003141926 
Protein GI256820647 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG1629] Outer membrane receptor proteins, mostly Fe transport 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAAGTG AAAAGAAATA TACACAACCA TTAGGATACC AAAGGTTCAT CTCTTTGGTA 
CTCATTGCTT TTCCTTTTTT TTGCTCAGCT CTTTACGCTC AAACTGCAAC TCTCACCACT
GTTTCTCCTA CTACTATTTC TGACACTACA CAGCCTATTC AGTTAGAAGA AGTGGTAGTA
ACTGCCAAAG AACTTCCTGC TCCTACCTCT ACTTCGCTTA TCGACCGCAA GGCTATGCAA
CACCTCCAGC CTTCCAGCTT TGCCGATTTG GTGAGTTTGC TCCCTGGTCG GCAAGTTACG
ACTCCCTCAT TAAATTATGC TAATACGCTC ACTATCAGGC AGACAGGAAC GCCTATGGAC
GGCTATAGGA TTTCCTCTTT AGGCGTAGGC TTCAATATCG ATGGTGTTCC CTTAGATGTG
AATAACAATA TGCAATCTAC GGTAGGTACC GGAATGGTTA TCACCCCTCA ATCGAATTAC
GCCGATGAGA AGCGCAACAC TACCCGCTCA GGAGTAGATA TGCGCACCAT TGCTACCGAT
GATATTGAAA CAGTGGAGAT TATACGCGGT ATTCCATCGG TAAAATTTGG TGACATCAGC
AGTGGAATAG TAACAATTCA CCGCAAAAAA GGCTATACTC CCCTTAGGGC GCGAGCCAAA
GCCGATGGTT TTAGCAAACT TTTCTATGTA GGCAAAGGCT TTGAACTTAC TGAAAATCGC
CTCAAACTCA ACTTCAGTTT GGATTATTTA GATTCCCAAC CCGACCCGCG TAACAGCTTT
GAAAACTACA AACGTTACAC TGCTTCGGCT CGTGCCGAAA AACACTTTAA TACCGAAAAT
CCGCTTACGT GGAATTTCAG CATCGACTAT ACGGGCACTA TCGACAAGGA AAAACGCGAC
CCCGATGTAG GTTTTGATCG CTATGATGCT TATCAATCCA TTTACAACAA TATCCGTATC
GCCAATGGGC TGAGTTGGGA ACTCCACAAA ACATTCTTCA AAACATTGGT ACTCAAAACT
AGTTACTCGC AGAGTTTTGA CCGTATTGAA CAAGACAAAT GGGTGCAAAT CACCAATGCG
CGCCCTGTCT TCACAAACAC AGAAGCAGGT GAATTTTATG GCGCATTTTC CGACCCTAAC
TATGTGTCGC ACTTGCTCGT AGATGGCAAA CCGCTACACC TTTATACCGA CTTTGCAGCA
GGAGGTTATA AACGTTTTGC AGGATTTCTT AACGAGTTTC TTATAGGGCT TACTTACAAC
TACAACAAAA ACAACGGTCT GGGTCAGGTA TACGATTTGG CGCACCCACC TTCACCCGAA
ATAACTACAC GTCCGCGTGC TTTCAAGAGT ATTCCCGCGA TGCAGGATAT GTCTTTTTAT
GTTGAAGAAC AGTTAGAAAA AACCTTTTGG CATACCGATT TCTTCTTGCG TGCCGGTTTG
CGCGCCAACA CCCTTTTAGG ACTTGATTCA CGCTACGCAT TGCATAACAA GGTGTGTTTC
GACCCACGTG TGAATATGAA AGTTACTTTT CCTAAAATTG AATTTGCTAA CCAAAAAGCT
CTCATTATCA GTCTTACAGG TGGTTGGGGC AAGCACAGCA AACTCCCTAC TCAAGAGATG
CTCTACCCTC AAGAAAAATA CGAAGATTTT GTTCAGCTAA ATTACTATCA CAGCCAAAGG
GCTTACCGCC AATTGCACTA TAAAACGTAT ATTTTTCCGC AAGTGAACTA CAGCATTATG
CCCGCAGTGA ACAGCAAAGC CGAAGTGCGC CTTGGCTTGG AATACGACCA CCATTCGCTG
TTTATCACCT ATTTCGACGA GCGTATGCAA TCGGGTTTCC GAAAGATGAG CGATTATCAC
AAGGTATTCT ATAAAAAATA CGATGCTACA GGGCTCAATC ACAATGCGAT TACTGCCCCT
CCTTTGGTGG AAAACCTGCC CTATACTGTG CAAGACGCCC TGATACTCTC AGATATGGAG
AGCAATGGCT CAGCTATCGA TAAACAAGGG ATGGAATTTC AGTACAGTAG CAAGCGCCTA
CAATTGCTCA ACACTCGCTT TACCCTTAGT GGTGCGTGGT TTCACAGCTT GTATTACAAC
TCATTGCCTG TATATCGTCC TGCCGATAAA GATATCATTA ACAACCGCAA ATATTACAAT
CTGGGAGTAT ATCCTGAAAT GGAGAAGTAC GACTGTGAAC AGTTACAAAC CAGTCTCGTA
GCCGATACTT ACCTCCCTGA ACTGCATCTC ATCACCTCTG TGCGTTGCGA CCTCACTTGG
TATGTTATCA ACAGCAGTCC ATCTCTTAGT CGTGTGCCCA CTCACTACAT CAGTGAAGAT
GGTGTGCGTC ACCCATATAC AGCGACAGAA GCGAGTGACC CCGTATTGCA ATGGCTCATA
CGCCCTACAA CTATAAGTCT CAGTGATAGA ACCCCATTAT CAATGAACAT ACATCTAAAA
ATATCAAAAG AATTTTATAA ATATTTTACC CTTTCGATAT ATGTAAACAA TCTGTTCAAC
TTTTACGAGG ACTACCGTGT GAACAGACAA TACATCAACC GTCGCGGACT TATCAACCCC
TATTTTGGAA TGGAGATGAA CATTTCTTTA GGGAAGAGTA AATTAGCAAA TTAA
 
Protein sequence
MKSEKKYTQP LGYQRFISLV LIAFPFFCSA LYAQTATLTT VSPTTISDTT QPIQLEEVVV 
TAKELPAPTS TSLIDRKAMQ HLQPSSFADL VSLLPGRQVT TPSLNYANTL TIRQTGTPMD
GYRISSLGVG FNIDGVPLDV NNNMQSTVGT GMVITPQSNY ADEKRNTTRS GVDMRTIATD
DIETVEIIRG IPSVKFGDIS SGIVTIHRKK GYTPLRARAK ADGFSKLFYV GKGFELTENR
LKLNFSLDYL DSQPDPRNSF ENYKRYTASA RAEKHFNTEN PLTWNFSIDY TGTIDKEKRD
PDVGFDRYDA YQSIYNNIRI ANGLSWELHK TFFKTLVLKT SYSQSFDRIE QDKWVQITNA
RPVFTNTEAG EFYGAFSDPN YVSHLLVDGK PLHLYTDFAA GGYKRFAGFL NEFLIGLTYN
YNKNNGLGQV YDLAHPPSPE ITTRPRAFKS IPAMQDMSFY VEEQLEKTFW HTDFFLRAGL
RANTLLGLDS RYALHNKVCF DPRVNMKVTF PKIEFANQKA LIISLTGGWG KHSKLPTQEM
LYPQEKYEDF VQLNYYHSQR AYRQLHYKTY IFPQVNYSIM PAVNSKAEVR LGLEYDHHSL
FITYFDERMQ SGFRKMSDYH KVFYKKYDAT GLNHNAITAP PLVENLPYTV QDALILSDME
SNGSAIDKQG MEFQYSSKRL QLLNTRFTLS GAWFHSLYYN SLPVYRPADK DIINNRKYYN
LGVYPEMEKY DCEQLQTSLV ADTYLPELHL ITSVRCDLTW YVINSSPSLS RVPTHYISED
GVRHPYTATE ASDPVLQWLI RPTTISLSDR TPLSMNIHLK ISKEFYKYFT LSIYVNNLFN
FYEDYRVNRQ YINRRGLINP YFGMEMNISL GKSKLAN