| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Coch_1645 |
|---|
| Symbol | |
|---|
| ID | 8368091 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Capnocytophaga ochracea DSM 7271 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013162 |
|---|
| Strand | - |
|---|
| Start bp | 1970557 |
|---|
| End bp | 1971255 |
|---|
| Gene Length | 699 bp |
|---|
| Protein Length | 232 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 644984085 |
|---|
| Product | two component transcriptional regulator, LytTR family |
|---|
| Protein accession | YP_003141751 |
|---|
| Protein GI | 256820472 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG3279] Response regulator of the LytR/AlgR family |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATTGTT TGATAATAGA CGATGAACCC TTAGCCCGTA TCGGTATGGA GCGCCTTGTA
AGGCAATACA GCAACTTGAA GGTAGTAGGC ACTTTCAAAA ATTCGGTAGG TGTTGCCGAC
TTTCTGAAAA AGAACGAAGT ACACCTGCTC TTTTTGGATA TAGAGATGCC TGGGGTAAAC
GGCTTGGTGT TCGCTAGAAC TTTACCCGAA CAAACTTTAG TGATATTTAC TACCGCCTAC
AGCCAATATG CCTTAGACAG CTATGAAGTT GATGCTCTCG ACTATTTAGT GAAACCCATC
ACTCTCGAAC GCTTTAAAAA AGCTATTGCC AAAGCCGAAA GTTACCACCA ATTGCTCACT
CAACAGAAAA CCGATTTTGA AGCCATCGAT ACACAATGCA TTAGCATCCG TGCCAATAGG
CGCAATTATC GTATTCCTCA TAACGACATC CTATATATAG AAGCATTGAA AGATTACGTG
ATTATCCACA CCTTCACCGA CCGCTACATC ACGTGGATTA ATCTCAAAAA CATACATAGA
CAGCTCCCTG AGTCGGTATT TGTACGCGTC AATAAGAGTT ATGTAGTGAA TATACAACAC
GTTACTTCCT ACACCCACCA GTTTGTGTAT ATAGGTGAGA CAGAAATTCC TATAGGCAGG
GCGTATCAAG AAGAGTTTTT GGCACAATTG AAAGAATAA
|
|---|
| Protein sequence | MNCLIIDDEP LARIGMERLV RQYSNLKVVG TFKNSVGVAD FLKKNEVHLL FLDIEMPGVN
GLVFARTLPE QTLVIFTTAY SQYALDSYEV DALDYLVKPI TLERFKKAIA KAESYHQLLT
QQKTDFEAID TQCISIRANR RNYRIPHNDI LYIEALKDYV IIHTFTDRYI TWINLKNIHR
QLPESVFVRV NKSYVVNIQH VTSYTHQFVY IGETEIPIGR AYQEEFLAQL KE
|
|---|
| |