| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Coch_1209 |
|---|
| Symbol | |
|---|
| ID | 8367632 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Capnocytophaga ochracea DSM 7271 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013162 |
|---|
| Strand | + |
|---|
| Start bp | 1416473 |
|---|
| End bp | 1416778 |
|---|
| Gene Length | 306 bp |
|---|
| Protein Length | 101 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 29% |
|---|
| IMG OID | 644983633 |
|---|
| Product | virulence-associated protein D (VapD) conserved region |
|---|
| Protein accession | YP_003141320 |
|---|
| Protein GI | 256820041 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3309] Uncharacterized virulence-associated protein D |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTATGCTA TAGCTTTTGA TATGAATATA TCATCTTTAG AAAAGCATTA TGGGAAACCG
TATAATAATG CTTATTATGA GATAGCTTCA GAACTTGAAA AATATAACTT TTACAGAATA
CAAGGGAGTA CCTATGTAAC CGATAATAAG GATATGGGCA ATTTAATGTT AGCCATAGAT
GCCCTTGCTT ATATTGAATG GTTTGCTAAT GCTGTTAGAG ATATAAGAGT ATTCAGAATT
GAGGACTGGA GTGATTTAAC TCAAGTAGTA AAAATAAAAT CCACTAAAAA AACATTTATT
AATTAG
|
|---|
| Protein sequence | MYAIAFDMNI SSLEKHYGKP YNNAYYEIAS ELEKYNFYRI QGSTYVTDNK DMGNLMLAID
ALAYIEWFAN AVRDIRVFRI EDWSDLTQVV KIKSTKKTFI N
|
|---|
| |