Gene Coch_1172 details

Gene Information

• Locus tag: Coch_1172
• Symbol: rpsD
• ID: 8367594
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Capnocytophaga ochracea DSM 7271
• Kingdom: Bacteria
• Replicon accession: NC_013162
• Strand: +
• Start bp: 1382986
• End bp: 1383591
• Gene Length: 606 bp
• Protein Length: 201 aa
• Translation table: 11
• GC content: 37%
• IMG OID: 644983598
• Product: 30S ribosomal protein S4
• Protein accession: YP_003141286
• Protein GI: 256820007
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0522] Ribosomal protein S4 and related proteins
• TIGRFAM ID: [TIGR01017] ribosomal protein S4, bacterial/organelle type

Plasmid Coverage information

• Num covering plasmid clones: 24
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCAAGAT ATACAGGACC AAAAACAAAA ATAGCTCGTA AATTTGGTGA AGCTATCTTC 
GGAGATGATA AATCTTTTGA AAGAAAAAAC TATCCTCCCG GACAACACGG TTTGGCACGC 
CGTAGAGCAA AACGCTCTGA ATATGCTATC CAGCTACAAG AAAAACAAAA AGCTAAATAT 
ACTTATGGTA TTTTAGAAAA ACAATTCCAT AATCTATATG AAAAAGCAAA AAGAAGTAAA 
AGTATTACCG GTGAGGTACT TCTTCAACTT TGCGAATCTC GCTTAGACAA TGTAGTATAC 
CGTATGGGCA TTGCTCCTAC TCGTAGTGCA GCCCGCCAAT TGGTATCTCA CCGTCACATC 
ACTGTAAACG GAAATATTGT AAACATTCCG TCTTACTCTC TTAAACCAGG TGATGTAGTA 
GGCGTTCGCG AAAAATCAAA ATCTTTAAGT GTGATCGAAA ATTCATTGGC AGCTCATAGT 
GCTGTATACG AATGGATCAC TTGGAACCCT GAAAAATTAG AAGGTACTTT CGTAGCAGTA 
CCTCAACGTA TTCAGATTCC TGAAAATATT AAAGAACAGT TAATCGTAGA GTTGTACTCT 
AAATAA 

 

Protein sequence

MARYTGPKTK IARKFGEAIF GDDKSFERKN YPPGQHGLAR RRAKRSEYAI QLQEKQKAKY 
TYGILEKQFH NLYEKAKRSK SITGEVLLQL CESRLDNVVY RMGIAPTRSA ARQLVSHRHI 
TVNGNIVNIP SYSLKPGDVV GVREKSKSLS VIENSLAAHS AVYEWITWNP EKLEGTFVAV 
PQRIQIPENI KEQLIVELYS K