Gene Coch_1080 details

Gene Information

• Locus tag: Coch_1080
• ID: 8367502
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Capnocytophaga ochracea DSM 7271
• Kingdom: Bacteria
• Replicon accession: NC_013162
• Strand: +
• Start bp: 1282417
• End bp: 1283016
• Gene Length: 600 bp
• Protein Length: 199 aa
• Translation table: 11
• GC content: 43%
• IMG OID: 644983508
• Product: integral membrane protein
• Protein accession: YP_003141196
• Protein GI: 256819917
• COG category: [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG0811] Biopolymer transport proteins

Plasmid Coverage information

• Num covering plasmid clones: 8
• Plasmid unclonability p-value: 0.00417975
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGTGAAA TTTCTAAAAT TCTGTTCTTG GTATCGGATA GTTTGCTGAT ACCCGACATT 
ATCGTACTCT TGGTACTTTT TGTGCGCGCT TTATTATTGG TAGGTAGTTT CTACAATCGC 
ATCATCACTA AATACAAAAA CGACAAACAG TTGAATGAAG CCATCAGGAC GCTCACACCC 
GAAAGCGCAG AACAGCTTAA AGCCCTATTG CCCGCACGCG ATAATGCTCT TTACACCCAA 
TACTTGCGTG ATATTCTTAG TCATATACCC GACGAGGCAT ATTACGACTA TATGATTTCC 
AACTTCGAGA ATGAAGGCGA AAAAGACATA GCCACCTCCA AGCTGTTGGC GAAAGTAGGT 
CCCGTTTTAG GGCTCATCGG TACGCTTATT GCTATGAGTC CGGCACTTAC GGGGCTCTCC 
ACCGGAGACA TTTCAAAGAT GGCGAGTAAT ATGCAAGTGG TATTTGCCAC CACCGTTGTA 
GGCTTAGTGA TTAGTTTAGT AGGGTTGGTA ACTTTGCAGT TCAAACAACG CTGGTATAGC 
AAAGAAATCA ACAACCTTGA ATATGTAAGT AGAGTATTAA CTCAACCCGC AAGACAATGA 

 

Protein sequence

MSEISKILFL VSDSLLIPDI IVLLVLFVRA LLLVGSFYNR IITKYKNDKQ LNEAIRTLTP 
ESAEQLKALL PARDNALYTQ YLRDILSHIP DEAYYDYMIS NFENEGEKDI ATSKLLAKVG 
PVLGLIGTLI AMSPALTGLS TGDISKMASN MQVVFATTVV GLVISLVGLV TLQFKQRWYS 
KEINNLEYVS RVLTQPARQ