| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Coch_0778 |
|---|
| Symbol | |
|---|
| ID | 8367196 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Capnocytophaga ochracea DSM 7271 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013162 |
|---|
| Strand | - |
|---|
| Start bp | 937791 |
|---|
| End bp | 938978 |
|---|
| Gene Length | 1188 bp |
|---|
| Protein Length | 395 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 644983205 |
|---|
| Product | protein of unknown function DUF214 |
|---|
| Protein accession | YP_003140896 |
|---|
| Protein GI | 256819617 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG4591] ABC-type transport system, involved in lipoprotein release, permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACTTCTA TTTTCTACAT AGCAAGGCGT TATATGTTCG CCAAAAGTTC GCAGAACGTT
ATCAACATCA TCAATAGGGT TACGGCTTTT GTGGTAGTGT TGGGCGGTGC TGCCCTCTTT
ATTGTGCTCG CCGGCTTCGC AGGTCTCAAA AACTTTACGC TTTCCTTCTC CTCTACTTTC
GACCCCGACC TAAAAGTGTT TCCTAAAACA GGCAAATACC TATCACTCAC CAATCAAGAT
ACGCTCAAAT TAAGCCAACT CTCATCGGTA GTACACTTTA CCAAAGTGTT AGAAGAACAG
GTGTTTCTCA CTCACAACCA AAAAAACCAC ATCGCCTATA TCAAGGGAGT AGATGCTGAG
TACCCCAAAG TAAACGATGT CGATAGTATC CTCGTGCTGG GCAATTGGGA GCTCTCACCT
CCCAGTGTGA TAGTGGGCGC TACTATTTTC AATAATCTCG GTTTAAATCT CCTCGATGGT
TCTTCCCCTC TACAAATAGT AGTTCCCAAG GCAGGCAAAG GCAGTATCTT AAACGACCCA
ATGCCCTACC GTCAAGCCTT TTCAGTAGTA CAAGGCATCT ACCAACTCAC GGAAGAATTA
GATAAGAAAT ACGTATTTTC ATCATTAGAC GAAGCCCAAT TCTTATTGGG GCTAAGTAAG
GGTCAGGTCT CAGCGATAGA AGTGAAATTA GCTCCAAATG CTGATGAAAA GCAAGTCGTC
GAACAGCTCT CACAACTCTT TCAAGAGCCC GTAGTAGTGA AAAACCGCGC ACAGCTAAAC
GATGCGCTTT ACCGTATGCT CAATACCGAA AATATAGCGG TGTATCTGAT TTTCATTTTG
GTGCTCATCA TTGCACTTTT CAACCTCGTA GGTGCTATCA TTATGATGAT ACTCGACAAG
AAAGACGACC TGCAAACGCT CTATGCACTC GGTATGAACG AAAAACAAAT GCGACAGATA
TTCTTCTGGC AAGGCACGAT GGCATCGGTA ATCGGCGCTC TGATAGGCAT TGCCTTAGGC
GTTGCGGTAG TCCTCTTACA ACAACATTTC CAGTTTGTAA TGATAAGCCC TACCTTAGCC
TACCCTGTCG CCATTACTCC TTTAAATGTA CTCATTGTAT TGGCTACGAT TGTAGTTTTG
GGCGTTTTAG CCTCTTTAGT AGCTTCCTCA CGAGTACGAG TAAAATAA
|
|---|
| Protein sequence | MTSIFYIARR YMFAKSSQNV INIINRVTAF VVVLGGAALF IVLAGFAGLK NFTLSFSSTF
DPDLKVFPKT GKYLSLTNQD TLKLSQLSSV VHFTKVLEEQ VFLTHNQKNH IAYIKGVDAE
YPKVNDVDSI LVLGNWELSP PSVIVGATIF NNLGLNLLDG SSPLQIVVPK AGKGSILNDP
MPYRQAFSVV QGIYQLTEEL DKKYVFSSLD EAQFLLGLSK GQVSAIEVKL APNADEKQVV
EQLSQLFQEP VVVKNRAQLN DALYRMLNTE NIAVYLIFIL VLIIALFNLV GAIIMMILDK
KDDLQTLYAL GMNEKQMRQI FFWQGTMASV IGALIGIALG VAVVLLQQHF QFVMISPTLA
YPVAITPLNV LIVLATIVVL GVLASLVASS RVRVK
|
|---|
| |