| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Coch_0529 |
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| Symbol | |
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| ID | 8366941 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Capnocytophaga ochracea DSM 7271 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013162 |
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| Strand | + |
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| Start bp | 664833 |
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| End bp | 666053 |
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| Gene Length | 1221 bp |
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| Protein Length | 406 aa |
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| Translation table | 11 |
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| GC content | 37% |
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| IMG OID | 644982953 |
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| Product | putative RNA polymerase, sigma-24 subunit, ECF subfamily |
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| Protein accession | YP_003140650 |
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| Protein GI | 256819371 |
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| COG category | [K] Transcription |
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| COG ID | [COG4941] Predicted RNA polymerase sigma factor containing a TPR repeat domain |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCTCACT CACAACTTTT ATCCGATTTG TTTCGAAAAG AATACGCTAA AATGGTGGCA
GTGTTATGTC GCCATTTTGG CTTTTCTCAT TTGGAAATTG CTGAAGATAT TGCAAGTGAT
ACTTTCCTAA AAGCCTATGA ATTATGGGAA ATACAGCCCT TGCCTGCTAA CCCTACTGCG
TGGCTTTACA CCGTCGCCAA AAATAAAGCT AAGGACTATG AGAAACACAT AGCTATATTT
GAAGATAAAG TAAAAAAGGC ACTTACACCT ACTGAGAAAA GCGAAGAACT TACCTTTGAA
ACTTCTGAAA TAAACGACAG TCAGTTAGAA ATGCTTTTCA ATATATGTGA CCCTTCTATT
TCTGTAGAAT CACAAATAAG TTTAGCTTTG CAAATACTCT GTGGTTTTAC AGTAGAAGAG
ATTGCCAATG CCCTACTCAC CCATACCGAA ACTATAAAAA AACGACTTCT TAGGGCTAAA
AACAAGCTTA GAGAGCATCA TTTTCAAATC AAAACCGTAA GCCCAGCCAA TATACAAGCC
CGATTAGAAA CTGTACTGCG CTGTTTGTAC TTATTTTTCA ATGAAGGCTA TTTTTCAGAA
ACTAATAATC AGTTCATACG AAAGGAGTTC TGCAAAGAAG CCTTACGTCT TACGCTCTTA
CTTGCCGAGC ACCCTCAAAC TGATACACCA CAAGTGAATG CTCTTTTATC GCTGATGTGT
TTCCAAAGTT CTAGACTTGA AGCTCGTATC AATACCACAG GTGAAAACAC CCTTTATGAA
CAACAAGATA AAAGCAAATG GGACAAAGAA CTCATACACA GAGGCAACTA TTACTTAGTA
AAAGCCTGTG AAGACTCTCA AATCTCTAAA TATCACTTAG AAGCTGGTAT TGCCTATTGG
CATACTACCC CTACCGATGA AAATAAGTGG GAGTATATTC TCCGCCTATA TAACCAACTC
ATTATCATTG AATATTCTTC TGTAATAGCC TTAAACAGGA CTTTTGCTTA CGGCAAGGTG
TACGGCAAAG AAAAAGCTAT TGTAGAAGCT GAAAAATTAG GACTACAAGA CAATCGTTAC
TACCACGAGT TATTAGGATA TTTGTATACT GATATCAATA ACCAAAAAGC AATTGCTCAC
TACCAAAAAG CGATTGCTCT TTCTAAATCG GCTAACGAGC GCGCTACACT GCAAAAACAG
ATAGAACAAT TAGTGAAATA A
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| Protein sequence | MPHSQLLSDL FRKEYAKMVA VLCRHFGFSH LEIAEDIASD TFLKAYELWE IQPLPANPTA
WLYTVAKNKA KDYEKHIAIF EDKVKKALTP TEKSEELTFE TSEINDSQLE MLFNICDPSI
SVESQISLAL QILCGFTVEE IANALLTHTE TIKKRLLRAK NKLREHHFQI KTVSPANIQA
RLETVLRCLY LFFNEGYFSE TNNQFIRKEF CKEALRLTLL LAEHPQTDTP QVNALLSLMC
FQSSRLEARI NTTGENTLYE QQDKSKWDKE LIHRGNYYLV KACEDSQISK YHLEAGIAYW
HTTPTDENKW EYILRLYNQL IIIEYSSVIA LNRTFAYGKV YGKEKAIVEA EKLGLQDNRY
YHELLGYLYT DINNQKAIAH YQKAIALSKS ANERATLQKQ IEQLVK
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