Gene Coch_0260 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCoch_0260 
Symbol 
ID8366665 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCapnocytophaga ochracea DSM 7271 
KingdomBacteria 
Replicon accessionNC_013162 
Strand- 
Start bp338279 
End bp338893 
Gene Length615 bp 
Protein Length204 aa 
Translation table11 
GC content38% 
IMG OID644982680 
ProductBiopolymer transport protein ExbD/TolR 
Protein accessionYP_003140384 
Protein GI256819105 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG0848] Biopolymer transport protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.119193 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCAAAAC GTTCCGCACC CGAGGTAAAT GCAGGTTCAA TGGCTGATAT TGCTTTCTTG 
TTGTTGATAT TCTTTTTGGT AACAACAACT ATTGAGAGCA ACTCAGGGAT TACTGTAAAG 
TTACCTCCTA AACCACAAGA AAATACGCCA CCACCTCCAC CAGTAAAAGA GAAAAACGTA 
TTGGTAGTGG TAGTGAACAA GTACAACCAG TTGTTAATAA ACAACGAAGT TAAGGAACTT 
AAAGACGTAA AAGAAACAGC GCTTAATTTC TTGGATAATA ATGGAGATGG TTCTTGTACT 
TACTGTAAAG GTAAAAGAGA CCCTCTATCA TCTGACAACC CAGATAAAGC AGTTATTTCT 
TTGCGCAACG ACCGTGAAAC TTCATATCAC ACTTATATAG CTGTACAAAA TGAATTGATT 
AAGGCATATA ATGAGTTACG TGAGCGTGAA CGCAGACGTT TGTTCCCTAA CGAAGTACCT 
TACGTTCAGA TAGAGGAAGA ATTTAACGCA GCTCGTACTC CTAAAGACAG GAAAGATGCG 
TTAGAACCTA AAATCGTGAA ATTACAGGAG CTATTCCCAA GAAAATTGCT TGAAACAGCA 
CCTAAGAAAC ACTAA
 
Protein sequence
MAKRSAPEVN AGSMADIAFL LLIFFLVTTT IESNSGITVK LPPKPQENTP PPPPVKEKNV 
LVVVVNKYNQ LLINNEVKEL KDVKETALNF LDNNGDGSCT YCKGKRDPLS SDNPDKAVIS 
LRNDRETSYH TYIAVQNELI KAYNELRERE RRRLFPNEVP YVQIEEEFNA ARTPKDRKDA 
LEPKIVKLQE LFPRKLLETA PKKH