| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Coch_0224 |
|---|
| Symbol | |
|---|
| ID | 8366629 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Capnocytophaga ochracea DSM 7271 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013162 |
|---|
| Strand | - |
|---|
| Start bp | 293717 |
|---|
| End bp | 295174 |
|---|
| Gene Length | 1458 bp |
|---|
| Protein Length | 485 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 644982644 |
|---|
| Product | Glycosyl hydrolase family 32 domain protein |
|---|
| Protein accession | YP_003140348 |
|---|
| Protein GI | 256819069 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1621] Beta-fructosidases (levanase/invertase) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.851243 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAGA CACTTACATT GGCACTTTGT GCTACCGCTT TAATAGCTTG TGAAAAAAAA
GAATATTGTA GTAACGACCC TAATGCGGCT CCCGATGCTT CTACTTGTTA TGCCGTACAA
GATTATGGTC GTACTTATAA GCATTTCTTC CAGCCCAAGA ACGCTTGGGT AGGAGACCCT
ATGCCGTTCT ATGACAACGG TAAGTTCCAT ATCTTCTATC TCTACGACCA ACGTCCAGCA
CCTGCAACCT TCCACCCTTG GTATAGTGCT ACCACTACTG ATTTGGTTAA TTATACTGAT
AATGGTGAAG CAATTGCTTG TGGTGCCGAC GGTTCGCACG AAGATGCCCT CGGTACAGGT
TCAGTATTCA AAGATGGCAA TACCTATTAC GCCTTTTATA CGGGGCACAA CGGCGATTTA
GACCCCAAAG AAATCATCTA TTGGGCTACC TCTACCGATT TGAAAACGTG GACAAAGGAT
ACACAACACT CCTTCCGTGC TCCTGATAAG TACGATGCCA ATGAGTTCCG CGACCCTATT
GTATTTAAAG AAGGAAATGC CTATAAGATG CTCGTCAGCA CCCGTGCCGA TATAGGAAGC
GGTGTATGGA AAGGTGTCGT AGCACAATTC ACTTCTACCG ACCTTAAGAA CTGGACAAAA
GACCCGAACA CTCCCTTCTT CTATACTGAC CCTAGTGCTT TTATGGTAGA GTGTCCCGAT
GTGTTTACAC AAGGAAACTA TCAGTATTTA ATATTCTCTA ACATCGAAGA AAGCGTGCGC
CGTGTGCAAT ACAGATACCG TCGTGTAGGT GACAAGAATT GGATTACCCC TGCACAACAA
GACTTAGATG ACCGTGTGTT CTATGCTGGA AAAACCGCTA CCGACGGCAC TCACCGCTAT
ATATGGGGGT GGAATCCTTC GCGTATCAAC TACGAAGATA ATTCCGCTTA TCACTGGGGA
GGTTCTTTGG CTGTTCACGA GCTCACTCAA AACAGCGATG GTACCCTCAA CGTAAAAATG
CCTACCGCGT TCGATAGCAA ACAAGCGGTA TCTGCTTCTT TGGGTAGCAT TTCGTTAGAT
AATAATACTC GTGTGTTCGA CCGCCTTGGC ACTGGGTTCA ACAAAATAGT TGCCAAAATC
AAAGCCAATA CCGCCACAGA GTTTGGGGTG ATGTTTGGCG CTTGTGGTAA CCTTTATGAA
ACCTACCGCG TAACGATTAA TCTCAACAAA GGAGAGTTAC AACTCAACCG TGTGATTAGA
GACGGAGGCA CTGCTACCAT TAATAGCATA AAACTTCCCG TGAACGCCAA CAAGGAATAC
ACCGTGAAAA TAGTGCAAGA AGGCTCGGCA GCCGCAATCT ATGTGAACGA TGTAGTAGCC
CTTTCTATCC GTTGCTATAA GATGAACCAA AACCCTTGGG GTATCTTTGC TAACGGAACA
GCAAACTTTA CTTTTTAG
|
|---|
| Protein sequence | MKKTLTLALC ATALIACEKK EYCSNDPNAA PDASTCYAVQ DYGRTYKHFF QPKNAWVGDP
MPFYDNGKFH IFYLYDQRPA PATFHPWYSA TTTDLVNYTD NGEAIACGAD GSHEDALGTG
SVFKDGNTYY AFYTGHNGDL DPKEIIYWAT STDLKTWTKD TQHSFRAPDK YDANEFRDPI
VFKEGNAYKM LVSTRADIGS GVWKGVVAQF TSTDLKNWTK DPNTPFFYTD PSAFMVECPD
VFTQGNYQYL IFSNIEESVR RVQYRYRRVG DKNWITPAQQ DLDDRVFYAG KTATDGTHRY
IWGWNPSRIN YEDNSAYHWG GSLAVHELTQ NSDGTLNVKM PTAFDSKQAV SASLGSISLD
NNTRVFDRLG TGFNKIVAKI KANTATEFGV MFGACGNLYE TYRVTINLNK GELQLNRVIR
DGGTATINSI KLPVNANKEY TVKIVQEGSA AAIYVNDVVA LSIRCYKMNQ NPWGIFANGT
ANFTF
|
|---|
| |