| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cmaq_1797 |
|---|
| Symbol | |
|---|
| ID | 5708820 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Caldivirga maquilingensis IC-167 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009954 |
|---|
| Strand | + |
|---|
| Start bp | 1872938 |
|---|
| End bp | 1874281 |
|---|
| Gene Length | 1344 bp |
|---|
| Protein Length | 447 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 641276306 |
|---|
| Product | glutamyl-tRNA(Gln) amidotransferase subunit D |
|---|
| Protein accession | YP_001541608 |
|---|
| Protein GI | 159042356 |
|---|
| COG category | [E] Amino acid transport and metabolism
[J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0252] L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D |
|---|
| TIGRFAM ID | [TIGR00519] L-asparaginases, type I
[TIGR02153] glutamyl-tRNA(Gln) amidotransferase, subunit D |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.0649571 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 35 |
|---|
| Fosmid unclonability p-value | 0.610323 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGCTTACT CTGAACGGGT TAAGGCACTT CTAGGGGGGA TTGGGGAGTT TAGTAGGGTT
AGGGTGCGTT TAAAGGATGG CTCGACACTG GAGGGTTTAA TACTGCCTAG GCCTGAGGTG
GGTGATCCTG ATGTACTACT GGTGAAGCTT GAGAATGGTT ACAACGCCGG TATTCATGTT
GATAAGATAC AGGCAGTGGA GGTTCTAGGT AAATATGAGC CACCTAAGGT TGAGGTACCA
TCATACGGTA CTGTGATGAC TGTAAAGGGT ACTGGGGGTA GGGTTAGGTT CGTGGCCACT
GGGGGTACTA TAATGTCTAG GGTTGATTAC GTCACTGGGG CTGTTTACCC AAGCTTCAGT
CTGGAGGATC TTTACTTAAT GTACCCTGAG TTAAGGGGTT TAGCATCAAT AGAGATGGTT
AACTTAATGT CAATATTCAG TGAGGACATG ACTCCAACCA GGTGGAGTAT GATTGCTGAG
GAGGCGTGTA GGGCCTTTAA TGATGGTGTT GTTGGTGTTG TTGTCCTACA TGGTACAGAC
ACAATGCACT ACACGGCCGC TGCATTAGCC TTCGCCATTA AGTCAGCCCC AGGTCCAGTT
GTTCTCGTGG GTGCCCAGAG GAGTAGTGAT AGGCCTTCAA GCGACTCCTT TGAGAACCTT
TACGCAGCAA CCCTAGTGGC TTCCCAGGCT AAATTCGCCG AGTCCGTGGT TGCGATGCAT
GATAACACCA GTGATGGTGT GGTGGCTGTT CATAGGGGTG TGAGGGTTAG GAAAATGCAC
ACGTCCAGGA GGGATGCCTT CATATCGGTG AACCATGAAC CAATAGCCAA GGTACTGACC
AAGGAGGGTA AGTTAATAAT GAATACCAGT GACTATAAGG GGAGGGGGCG ATTGGAGTGT
AGTACTAGGT TTGATGATAA GGTGGCTTTA ATCAAGTATT ACCCAGGCAT GAGTAGTGAA
TTACTGGATT ACCTGGTGGA TAAGGGTTAC CACGGCATAG TAATAGAGGG CACTGGTTTC
GGTCACGTGG GGGAGTGGTT ACTTAAGCCA ATAGCTAGAG CCATTGAATC AGGCATACCC
GTGGTAATAT CCAGTCAGAC AATATTCGGT AGGGTTAACT TAAATGTGTA TAGGAGGGGT
GTGGAGTTGC TTAGGATTGG TGTAATACCA AGTGAGGACA TGCATCCTGA AACCGCCTTC
GTTAAATTAT CATGGGTCTT AGCCAACTCC TCAAGGGATC TTAATGAGGT TAGGAGACTC
ATGCTTACGC CACTTGCCTA TGAGATTAAT CAAAGGACAA GACCCATGGA TTACGTGGTT
AAGCCAAGTG TGCCCAAGGA TTAG
|
|---|
| Protein sequence | MAYSERVKAL LGGIGEFSRV RVRLKDGSTL EGLILPRPEV GDPDVLLVKL ENGYNAGIHV
DKIQAVEVLG KYEPPKVEVP SYGTVMTVKG TGGRVRFVAT GGTIMSRVDY VTGAVYPSFS
LEDLYLMYPE LRGLASIEMV NLMSIFSEDM TPTRWSMIAE EACRAFNDGV VGVVVLHGTD
TMHYTAAALA FAIKSAPGPV VLVGAQRSSD RPSSDSFENL YAATLVASQA KFAESVVAMH
DNTSDGVVAV HRGVRVRKMH TSRRDAFISV NHEPIAKVLT KEGKLIMNTS DYKGRGRLEC
STRFDDKVAL IKYYPGMSSE LLDYLVDKGY HGIVIEGTGF GHVGEWLLKP IARAIESGIP
VVISSQTIFG RVNLNVYRRG VELLRIGVIP SEDMHPETAF VKLSWVLANS SRDLNEVRRL
MLTPLAYEIN QRTRPMDYVV KPSVPKD
|
|---|
| |