Gene Cmaq_1560 details

Gene Information

• Locus tag: Cmaq_1560
• ID: 5709907
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Caldivirga maquilingensis IC-167
• Kingdom: Archaea
• Replicon accession: NC_009954
• Strand: +
• Start bp: 1640557
• End bp: 1641306
• Gene Length: 750 bp
• Protein Length: 249 aa
• Translation table: 11
• GC content: 45%
• IMG OID: 641276068
• Product: ABC-2 type transporter
• Protein accession: YP_001541373
• Protein GI: 159042121

Plasmid Coverage information

• Num covering plasmid clones: 22
• Plasmid unclonability p-value: 0.367161
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 46
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

GTGGTGGTCG TGAGACTGAG TAACATCTAT ACTGTGACTA AGTACATTAT GCTTAGTAGT 
AGGCATTGGA TTTACGCATC ATTAGCCTTC ACATTAATGT TCCCAATCCT ATGGCTCATA 
CTACTTAGGG TTGTGGGTAA TCCCCAGTAC ATGGGTTACT TCATAGTGGG TACTGTGGTT 
AACACGAGTT TCCTAGTACC ATTCTTAGGT ACATCTCAGG ACATAGCCTA CTTTAGGCGG 
GGATCAGCAA TATACGCGCT CTTATTCTCC AATGGTGCAG ACCACTGGGA TATAGCGCTC 
GGCTACATTA CCCAATTAAT TGCATTAAAC CTACCATCAG TGGTTTCACT CCTAATACTG 
TCAACGTTAA TAATAGGTAC AAGCTACGGT GTAGTACAGG TATTAGCCAC AGTAGCCACC 
GCAGTATTCA TATCACTCTC CTCAGCTCTA CTAGGCTATG CATTAGCCAT GGGAATCAGG 
AACTACAGGA TTGTGAATCA GGCAGCCCAG GTAATTCCAT GGCCACTACT CCTACTAGCC 
CCAGTCTACT ATCCAATCAC CATACTGCCC CCAGTACTGA GGTACGTTAG CCTAGCACTA 
CCCACCACTT ACATGGCTTT GGCTATTAAT GGTTCACTAA GCCTTAACTC AATGGAGTTA 
ATTAAGGGAT TACTAGGGCT CTTAGCCTAT TCCTCAGCGT CAATCTTAAT AGCCAGGTAC 
GCGGTAATTA GGGGTGAGGT GAATGGTTGA 

 

Protein sequence

MVVVRLSNIY TVTKYIMLSS RHWIYASLAF TLMFPILWLI LLRVVGNPQY MGYFIVGTVV 
NTSFLVPFLG TSQDIAYFRR GSAIYALLFS NGADHWDIAL GYITQLIALN LPSVVSLLIL 
STLIIGTSYG VVQVLATVAT AVFISLSSAL LGYALAMGIR NYRIVNQAAQ VIPWPLLLLA 
PVYYPITILP PVLRYVSLAL PTTYMALAIN GSLSLNSMEL IKGLLGLLAY SSASILIARY 
AVIRGEVNG