| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cmaq_1208 |
|---|
| Symbol | |
|---|
| ID | 5709277 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Caldivirga maquilingensis IC-167 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009954 |
|---|
| Strand | + |
|---|
| Start bp | 1273389 |
|---|
| End bp | 1274663 |
|---|
| Gene Length | 1275 bp |
|---|
| Protein Length | 424 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 641275712 |
|---|
| Product | manganese transporter, putative |
|---|
| Protein accession | YP_001541025 |
|---|
| Protein GI | 159041773 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1914] Mn2+ and Fe2+ transporters of the NRAMP family |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 0.00537127 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | GTGCCCTCCG GGACTGAGCT AGTGTTAGCT GCATCTAATA AATTAGCGAA AAAACTGAGG
GGTGCCGGGG GGTTAATTAG GAGTATTCTG GGTCCAGGTT GGTTAGTGAT GCTTGCTGAT
GTTGATGCAC CAAGCCTATT AACCGCAATG CAAAGTGGCT ACTACTTAAG CTACCTAATG
ATACCATGGT TAATACTACT AACCATACCG CTCTACTTCA TTCAGGAATT AACCATTAGG
TTAGCCTTAG GTAGTGGTAG GGGTATTGGG GAGATTATTA AGGATAAGTA CGGTAAGGGG
GTTGCCTTAT CCTCGCTTCT ACTCATGATG CTTATTGATG GTGCAGCATA CTTAGGTGAA
TACGCCTCAG TGGCTGCTGT TGGCTTAGCC CTAGGCATAC CCGTCGTAGC ATCAATACTA
CTCATATTAA CCCTACACAC AATCATAATA CTCTTCAATG GATCATATAG GAGAATTGAG
AATATACTCC TACTACTATC AACACTGATT CTAGTTTATC TAGCCGCATT CATAGTCATA
GGCCTTAACC CCACAACCCT ATACGAATCC ACTGGGCTTA TGCTTAACCC GATCTCATAC
ACTGACACTA GTTACGTCAG CCTATTAGCA GCCAACATAG GGGCGGCAGT AATGCCTTGG
ATGCTGTACT ACCAGTCATC CGCCATAGTG GATAAGGGTC TTAAACCCAG TCACTACACT
CATGAGAGAT TTGAGACCGC TGTGGGTGCT GTGGTCAGTG AATCACTGAT GGTTGCAGGT
GTCTTAATTG GTTATGGGCT TAGGGTTAAG GGTGGTTCCG TTGATGGTTT CCTAAGCGCC
TTGAAGTCAA TAAGGGTGGT AATGGGTAAT TACTGGTTCT ACACAGCGTC AATTGGGTTG
ATTGCGGCAG CAACCTTAGC AGTATTCGTG ATAAGCATGG GCTTCGCCTA CGGGTTAGGT
GAGTACCTGG GTAGACCCAG TGGTTTTAGG CATAGGCTTA GGGACGCCAA GGTCTTCTAC
TTATTCTACC TCATTGAGGT TATTCCAGCT GCACTACTGG TTCTATTGTC AAGTAACTTA
GCTAGCACGA TAATTGACAT AATGATTTTT AATTCAATAG CACTCTCAGT ACCATTAATA
CTACTAATAA GGTTAACCTC AGACCGTGGG CTAGTGGGCT CTTACGCAAT AGGTAGGTTT
AGGGCACTGG CATTATACGT AATCACAGTA ATAATACTAG TGCTTGGTAT TTACGCGGCT
GTGTTAACCT TTTAA
|
|---|
| Protein sequence | MPSGTELVLA ASNKLAKKLR GAGGLIRSIL GPGWLVMLAD VDAPSLLTAM QSGYYLSYLM
IPWLILLTIP LYFIQELTIR LALGSGRGIG EIIKDKYGKG VALSSLLLMM LIDGAAYLGE
YASVAAVGLA LGIPVVASIL LILTLHTIII LFNGSYRRIE NILLLLSTLI LVYLAAFIVI
GLNPTTLYES TGLMLNPISY TDTSYVSLLA ANIGAAVMPW MLYYQSSAIV DKGLKPSHYT
HERFETAVGA VVSESLMVAG VLIGYGLRVK GGSVDGFLSA LKSIRVVMGN YWFYTASIGL
IAAATLAVFV ISMGFAYGLG EYLGRPSGFR HRLRDAKVFY LFYLIEVIPA ALLVLLSSNL
ASTIIDIMIF NSIALSVPLI LLIRLTSDRG LVGSYAIGRF RALALYVITV IILVLGIYAA
VLTF
|
|---|
| |