| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cmaq_1136 |
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| Symbol | |
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| ID | 5708890 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Caldivirga maquilingensis IC-167 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009954 |
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| Strand | - |
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| Start bp | 1192464 |
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| End bp | 1193099 |
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| Gene Length | 636 bp |
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| Protein Length | 211 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 641275635 |
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| Product | DNA-directed RNA polymerase subunit E' |
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| Protein accession | YP_001540953 |
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| Protein GI | 159041701 |
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| COG category | [K] Transcription |
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| COG ID | [COG1095] DNA-directed RNA polymerase, subunit E' |
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| TIGRFAM ID | [TIGR00448] DNA-directed RNA polymerase (rpoE), archaeal and eukaryotic form |
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Plasmid Coverage information |
| Num covering plasmid clones | 39 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 34 |
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| Fosmid unclonability p-value | 0.418303 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGCGGCCTA TGATGCAAGG TTTAAATAAG CCTAATCCAT GTAGGGGTGT GTTTAGGGTA
ATAACAGTAG AGGATTACAT TAGGGTTCCC CCCTCGGTGT TTAATGAACC TATTGATAAG
ATTGCCTACG AGCAGTTGAG AAGTAACTAT GAGGGTAAGG TTGATAGGGA GTTAGGGGTC
TTTATAGCGG TATTCGATGT GAAGGTTGAT AAGAGGGGTG TCATAGTTTA CGGTGATGGT
GCAACATACC ATAAGGTTTC CTTTAAGGCA CTTGTCTTCG TCCCACTGAT TAATGAGATT
GTTGAGGGGG ATGTGGTTGA TGTTAAGGAG TATGGCGCCC ACGTCAGAAT AGGTGCCTTA
ACAGCCTTCA TACATAGGTC CCAGGTAATG GATGAGAACG TTGTACTCTT CGATAGGCAG
AGCGGCGTCT TCATGGGGGA GAAGAATAGG CAGAAGAAGG TTGGTAGAGG GGATGTGGTT
AGGGCTAGGA TAGTTGGGGT TAGTTACGTG TCGACGGCTA ATGGAATTAG GTTAAACGTA
TCAATGACTA TGAGGCAACC CTTCTTGGGT AAAATTGAGT GGATTGAGGA GGCCACTAAG
GCCAAGAAGA AGCCTCAGAG TAAGCCGGGG CAGTGA
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| Protein sequence | MRPMMQGLNK PNPCRGVFRV ITVEDYIRVP PSVFNEPIDK IAYEQLRSNY EGKVDRELGV
FIAVFDVKVD KRGVIVYGDG ATYHKVSFKA LVFVPLINEI VEGDVVDVKE YGAHVRIGAL
TAFIHRSQVM DENVVLFDRQ SGVFMGEKNR QKKVGRGDVV RARIVGVSYV STANGIRLNV
SMTMRQPFLG KIEWIEEATK AKKKPQSKPG Q
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