| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Clim_1658 |
|---|
| Symbol | |
|---|
| ID | 6353965 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chlorobium limicola DSM 245 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010803 |
|---|
| Strand | - |
|---|
| Start bp | 1793381 |
|---|
| End bp | 1794373 |
|---|
| Gene Length | 993 bp |
|---|
| Protein Length | 330 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 642669264 |
|---|
| Product | secretion protein HlyD family protein |
|---|
| Protein accession | YP_001943680 |
|---|
| Protein GI | 189347151 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1566] Multidrug resistance efflux pump |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 0.51372 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGATTCGTA ATCCGTTTTC TGATGATCTG ATTGGTCAGG GTGAGGTTTT TAACCAGTCA
GCTACTGTCC CGAGAATAAT TCTCTGGGTT CTTGTGCTGG CTTTTTTCGG TTTTCTTCTA
TGGGCATCCA TTGCAAAGAT CGATGTTTCG ATACCGGCGA CAGGAAAGCT TGAACCTACC
GGAGAGGTTA AAAGTGTGCA GGCCGCCATT GAGGGAGAAG TAAGCAGGCT CTATGTGGAA
GATGGAAGGC GCGTCAAAAA AGGTGAAGTT CTGCTCGACC TGGTTCCGGT ACTCTCTGTC
GGGGAGGAAT CAAAACTCAA ATCCTTGCAA ATAGCGCTCT CCAATGCCCG GCAACAGTAT
GCTACCGAGT CGGCCATGCT TTCGAAACTC AGATCCCTTC TGCAGAGCGC GGCTGTGTCC
GAATTTGAGG TTGAACAGAA AAAGCTTGAC GTGCTGAAAC TTCAGGCTCA GATTGCTGAT
TTGTCGGAAC AGATCAACAA GCAGAGTTAC ATGGCCAATC AGGCAACGGG TTATGAGGGG
ATTACCGCAC CGGTTGACGG TACTGTTTTC GACCTTCAGG TCAAGCAGGG TACCGTTGTC
AGCCAGGGGC AGATCATCCT GAAAGTCGTT CCTGACGATC AATTGACCGC AAGGGCTTTT
ATTTCGAATC AGGATATCGG ATTCGTGTAT GAAAATCTGC CGGTGGATGT CAGGCTTGAC
GCATTTCCCT ATGCTGAGTT CGGCGACATC AAAGGGAAAG TGCTCTGGGT TGGATCGGAT
GTTTTACCGC CTGACGATAT TATCAAATAT TACCATTTCC CGATTAAAGT GCTCCTCGAT
CAGCAGCATC TGATGGCGAA CGGAAAGAAA ATTTACTTGC AGTCGGGGAT GTCGGTCACC
TTGAACATCA AGGTAAGAAA GCGAACCGTT ATGAGCATTT TTACCGATCT TTTCACACAG
CAGGTTGATG CTGTCAGTCA TATCAGGAAA TGA
|
|---|
| Protein sequence | MIRNPFSDDL IGQGEVFNQS ATVPRIILWV LVLAFFGFLL WASIAKIDVS IPATGKLEPT
GEVKSVQAAI EGEVSRLYVE DGRRVKKGEV LLDLVPVLSV GEESKLKSLQ IALSNARQQY
ATESAMLSKL RSLLQSAAVS EFEVEQKKLD VLKLQAQIAD LSEQINKQSY MANQATGYEG
ITAPVDGTVF DLQVKQGTVV SQGQIILKVV PDDQLTARAF ISNQDIGFVY ENLPVDVRLD
AFPYAEFGDI KGKVLWVGSD VLPPDDIIKY YHFPIKVLLD QQHLMANGKK IYLQSGMSVT
LNIKVRKRTV MSIFTDLFTQ QVDAVSHIRK
|
|---|
| |