Gene Clim_0834 details

Gene Information

• Locus tag: Clim_0834
• ID: 6353904
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Chlorobium limicola DSM 245
• Kingdom: Bacteria
• Replicon accession: NC_010803
• Strand: +
• Start bp: 915887
• End bp: 917839
• Gene Length: 1953 bp
• Protein Length: 650 aa
• Translation table: 11
• GC content: 52%
• IMG OID: 642668457
• Product: alpha amylase catalytic region
• Protein accession: YP_001942892
• Protein GI: 189346363
• COG category: [G] Carbohydrate transport and metabolism
• COG ID: [COG0366] Glycosidases

Plasmid Coverage information

• Num covering plasmid clones: 34
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTCGGATA ATCCTGTATT TACAGAAAAA CGGCCTGTCG AACGCACTCT CAGGGAGATT 
GATTTTTCAG AACTTGTCAA AGGAAAACAG TTTTATCCTT CCCCGGCTTC GTGGGAGGAT 
GAGGTGCTTT ATTTTCTTTT TCTCGACCGT TTTTCTGACG GCCTTGAATC CGGCGGTTTT 
GCATCTCTTG ACGGAATGCC GGTTGAAGGA AACGATTCAG GCAGAACGAC GTTGCTTTTT 
TCACCGCAGA CCGATGCCGG AACAGCTGAC CGGGATGCGT GGTTTGAAGC GGGAAGAAAC 
TGGTGCGGCG GAACTATTGC AGGCATGAAG GATAAACTGG GTTATCTGAA ACGACTCGGA 
ATTACGTCCG TATGGGTCAG TCCGGTGTTC AGGCAGGTTA CGGGGAGCGG CGATTATCAT 
GGTTACGGAA TCCAGAATTT TCTCGATGTC GATCCGCATT TCGGAACAAG GGAAGAGCTG 
AGGGATTTTG TTGCCGCTGC GCATCAGTCC GGCATCAGGG TTATTCTTGA TATTATCATC 
AATCATGCGG GTGATGTGTT CGCTTATGAG GGCAATGCGC AGTATACCTA TCAGGATGGA 
TGTGAATGGC CAGTGCAGGG ATACCGCCGG CACAGCGGTG ATCCGGGAAG CCTGCCGTTC 
GGCAGGATGG ATTTCGAAAA TACCGATGGA GCTGTCTGGC CGGTGGAACT GCAGGACGAG 
AGTACCTGGT CAAAGCATGG CGAAATCAGG AACTGGGACT GTTTTCCGGA ATTTCTCGAC 
GGAGATTTCT GTACCCTCAA GGATGTCCAT CTCGGCGATG CCCCTAAAGA TCCTGCCCTG 
GCCTGGGATC TGCAGCGTCG TATTCGCGAG TTCAGACCTT CGAATGCGCT CAGGCATCTT 
ACGGAGATCT ATCAGTTCTG GATTGCCTAT GCCGATATTG ACGGGTATCG GCTTGATACG 
GTCAAACATA TGGAGCCTGG AGCAGTACGG TATTTTGCAA CTGCCGTGCA TGAGTTTGCC 
ATTTCGGCAG GCAAGGAAAA TTTCTATATC ATCGGCGAGA TTACCGGAGG ACGCTCCTAT 
GCGGCATCTA TTCTCGACAG CACAGGTCTC GATGCCGCAC TGGGCATCAA CGACATTCCC 
GATAAGCTGG AGTTCATGGT GAAAGGGTGG CGCAGTCCCG GCAATCCCGA TACCGATGAG 
CAGGAAGGGT ATTTCGATCT TTTTCGCAAC AGTCTGCTCG ACAACAAGCA TACCCGGCAG 
TGGTACGGCA AGCATATCGT CACCATGTTC GACGATCACG ACCAGGTTGG AGTCAGGCAC 
AAGTTCCGTT TTGCGGGCGA TGATTTCCGA AGCGAACTGC TTCTGCCGGT TGTGCTTGGC 
CTGAACCTCG CTTCAGCAGG GATTCCCTGT ATTTATTATG GAACCGAGCA GGCGTTCAAC 
GGTGCCGATC ATCGTCGGGA TGACGACTCG TACAGCGACG TTTTTCTGCG TGAGTGCATG 
TTCGGCGGAC CATTCGGTTC GAGGCAGAGT GTCGGCAGAC ATTTTTTCAA CGAATCGCAT 
CCGGTTTACC GGTTTATCCG CGATGTGACC GCGTTACGTC ATGATCATAT CGAGTTGAGG 
CGTGGGCGGC AGTACCTGCG TCAGGTTTCT GCTACGGGTT TCGATGGTGA TTTTTACTAT 
CCGCAGCCGA TGAACGGTCA ATTGCACTGG ATTATCGCCT GGTCCCGCAT TTTTGCACAG 
AGGGAGCTGC TTTGTGCCGT CAATACCGAT ACGGATAACG GGTTGACTGT TTTCGTCGTG 
GTTGACAGTT CGATACATCC TCCCGGCTCC TCCATGCAGT GTCTTTATAC AACCGCAGAT 
GATTTTCAGC ATCATGCCGT TACGGTGGAA GCGAGGCAGG GTTCTTCGAT TCGAATTACG 
GTTCCGGCTG GAGGTTTTGT GGTGTACGGA TGA 

 

Protein sequence

MSDNPVFTEK RPVERTLREI DFSELVKGKQ FYPSPASWED EVLYFLFLDR FSDGLESGGF 
ASLDGMPVEG NDSGRTTLLF SPQTDAGTAD RDAWFEAGRN WCGGTIAGMK DKLGYLKRLG 
ITSVWVSPVF RQVTGSGDYH GYGIQNFLDV DPHFGTREEL RDFVAAAHQS GIRVILDIII 
NHAGDVFAYE GNAQYTYQDG CEWPVQGYRR HSGDPGSLPF GRMDFENTDG AVWPVELQDE 
STWSKHGEIR NWDCFPEFLD GDFCTLKDVH LGDAPKDPAL AWDLQRRIRE FRPSNALRHL 
TEIYQFWIAY ADIDGYRLDT VKHMEPGAVR YFATAVHEFA ISAGKENFYI IGEITGGRSY 
AASILDSTGL DAALGINDIP DKLEFMVKGW RSPGNPDTDE QEGYFDLFRN SLLDNKHTRQ 
WYGKHIVTMF DDHDQVGVRH KFRFAGDDFR SELLLPVVLG LNLASAGIPC IYYGTEQAFN 
GADHRRDDDS YSDVFLRECM FGGPFGSRQS VGRHFFNESH PVYRFIRDVT ALRHDHIELR 
RGRQYLRQVS ATGFDGDFYY PQPMNGQLHW IIAWSRIFAQ RELLCAVNTD TDNGLTVFVV 
VDSSIHPPGS SMQCLYTTAD DFQHHAVTVE ARQGSSIRIT VPAGGFVVYG