| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Clim_0188 |
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| Symbol | |
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| ID | 6354640 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chlorobium limicola DSM 245 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010803 |
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| Strand | + |
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| Start bp | 207593 |
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| End bp | 209632 |
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| Gene Length | 2040 bp |
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| Protein Length | 679 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 642667816 |
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| Product | 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase |
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| Protein accession | YP_001942266 |
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| Protein GI | 189345737 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG0821] Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis |
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| TIGRFAM ID | [TIGR00612] 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.248529 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTATCATT ATCGCCGCCG TTTCACCCGC GAAGTACCTT TCGGACCGAT AGCTCTCGGA
GGATACCTGC CTATCAGGGT GGAGTCTATG ACCAACACCC ATACGTTCGA TACTGCCGCA
TCTGTCGAGC AGTGCAGACG TCTCCATGAC GCCGGATGCG AAATCATCAG GCTTACCGTG
CCGACAGAGC GCGATGCCGA CAATCTGAAG CAGATCAGAG ATCAGCTTCG GCGTGACGGT
ATCGATACTC CTCTGGTTGC CGACATTCAT TTTTCTGCAC GTGCAGCGAT GAAAGCCGTC
GAGTATGTTG AAAACATCAG GATCAATCCC GGCAATTATG CCACCCGGCA GAAGTTCTCG
AACAATGAAT ATACGGAAGC CGCGTATCGT GAAGAGCTCG ATGTTGTCAG GAAAGAGTTT
CTTCCGCTGG TGAGCAGGGC AAAAGAGCTG GGTGTTTCCA TGAGAATCGG CACCAATCAC
GGTTCGCTTT CCGACAGGAT TGTCAGTCGA TACGGAAACT CACCGGAAGG AATGGTTGAG
GCGGCTCTCG AGTTTGCGAG GATCTGTGAA GAATACGGGT ATTATGACCT GCTTTTTTCC
ATGAAATCCT CGAACGTCAG AGTCATGATT CAGGCTTACC GGCTGCTTGT CAAAAGAGCC
GATGCCGAAC TTCGATACTC CTATCCACTG CATCTCGGAG TGACCGAGGC AGGTGATGGT
GATGAAGGCC GGGTAAAATC CGCCATGGGC ATAGGAGCGC TTCTCGAGGA TGGGCTTGGC
GACACCATTC GGGTCTCTCT CACTGAAGAC CCGGTTAACG AGGTTCCGGT CGGATTTGCA
ATCGTAAAAA AATACAACGA CTACCATCTG ATTCGGGGAG ACAACGCACA CCTTCCCGTA
AAGCATGTTG TCGAAAGCCG TCAGGCTTCC GGGTCGTCGC TGTTGGCTCC GTTCGATCCG
TTCAGCTACA GCAGGAGGGT TTCCCGTACG GTCACTATTG CCGGTATGAC GGTCGGAGGC
AACGAGATGC CGAGGCTTGA AACGGAAATA CATGCGCCCA TTTCCGATCC CGACGCACTT
TTTCAGGAGA TTACAGAAAG GCTTGCTCCT GAAAAATTAC CCGACGCGAT CCGTTCGGAA
CTCGTCGGTA TCCGCATCGA GAGCCCCGAA GAACTTGCTT TTCTTGAAAA TCTGCTGGTC
AAACTGGGCG ATGCCGGACG ATCGGTCACG GCAGCGACTT CCGACAGCGC CTTGCTTGCC
GGAATAAGCC GAAACGTTAT CAAGGCAAGG TTTGATATCC GGGAGGGAGA AGCTCTTGAT
GCAGAGTTAC TTCTCAGGCA GCTCGAACCG GATGCTCCTG CGGTTCTGGA GTTTTGTTTT
GTTCATCAAC AGACCGGCGA AGGGGTTCCT GCACAGGTAC TTGTGCGTCT TGCAGAGAAA
TTGCGTGAAC GCGGTTTTGA GCGGATAATG TTTTCGATCA GTTCGTCCGC TACGGTTTTT
GTCTATCGGC ACCTTGTCAG GGAGTTCAAC GAGAGGGGGT TCGATTATCC GATAGTCGTC
CGTTTCAACG CTCATAACGG AGATACTCTG AAGACTCTTA TCGATGCATC CGTTCAGGCA
GGAACCCTGT TCTGCGATGG TATCGGCGAT ATACTCGCTC TTGAAACCGT TCTTCCGGCT
TCTGCCGAAA TCGATCTTGC CTTCAATATT CTGCAGGGGG CGCGCATCCG GATGTCCAAA
ACCGAGTTCA TCTCCTGTCC CGGCTGCGGG AGAACCTATT TTGATCTCGA AAAGGCCGCC
ACAGCAATCA AGCAGAGGCT CCTGCACCTG AAGGGGCTGA AAATAGGCAT AATGGGCTGT
ATAGTCAATG GGCCCGGTGA AATGGCCGAT GCCGATTTCG GTTATGTCGG TTCCGGAAAA
GGCAGGATAA GTCTTTATGT CGGAAAAGAT CGCGTGGAAG ATAATCTTCC GGAAGCCGAA
GCGGTTGATC GCCTGATCGA ACTGATCAGG GAGCGAGGCC GATGGGTAGA TCCTGCGTAG
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| Protein sequence | MYHYRRRFTR EVPFGPIALG GYLPIRVESM TNTHTFDTAA SVEQCRRLHD AGCEIIRLTV
PTERDADNLK QIRDQLRRDG IDTPLVADIH FSARAAMKAV EYVENIRINP GNYATRQKFS
NNEYTEAAYR EELDVVRKEF LPLVSRAKEL GVSMRIGTNH GSLSDRIVSR YGNSPEGMVE
AALEFARICE EYGYYDLLFS MKSSNVRVMI QAYRLLVKRA DAELRYSYPL HLGVTEAGDG
DEGRVKSAMG IGALLEDGLG DTIRVSLTED PVNEVPVGFA IVKKYNDYHL IRGDNAHLPV
KHVVESRQAS GSSLLAPFDP FSYSRRVSRT VTIAGMTVGG NEMPRLETEI HAPISDPDAL
FQEITERLAP EKLPDAIRSE LVGIRIESPE ELAFLENLLV KLGDAGRSVT AATSDSALLA
GISRNVIKAR FDIREGEALD AELLLRQLEP DAPAVLEFCF VHQQTGEGVP AQVLVRLAEK
LRERGFERIM FSISSSATVF VYRHLVREFN ERGFDYPIVV RFNAHNGDTL KTLIDASVQA
GTLFCDGIGD ILALETVLPA SAEIDLAFNI LQGARIRMSK TEFISCPGCG RTYFDLEKAA
TAIKQRLLHL KGLKIGIMGC IVNGPGEMAD ADFGYVGSGK GRISLYVGKD RVEDNLPEAE
AVDRLIELIR ERGRWVDPA
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