| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ccel_1385 |
|---|
| Symbol | |
|---|
| ID | 7310163 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium cellulolyticum H10 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011898 |
|---|
| Strand | + |
|---|
| Start bp | 1684686 |
|---|
| End bp | 1686425 |
|---|
| Gene Length | 1740 bp |
|---|
| Protein Length | 579 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 35% |
|---|
| IMG OID | 643608307 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_002505719 |
|---|
| Protein GI | 220928810 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1132] ABC-type multidrug transport system, ATPase and permease components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.0000408144 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATAAAAA AACTATTAAG TTATGTAAGA GAATTTAAAA GAGATTCTAT CGTCACACCA
GTATACATAG CATTGGAAGT GGCCATGGAA ATAGCTATTC CATTATTAAT GGGATGGATT
ATTGATAATG GGGTAGAAAA AGGAAACATG CAATATGTAC TTACTGTTGG GGCAGTAATG
GTAGTAGTAT CCGTTTTTGC TTTAACTTTC GGTGTTTTAG CAGGTAAATA TGCTGCAAGA
GCATCTTCTG GTTTTGCAAG AAACCTGAGA AAGGCAATGT ATGATAAAAT ACAAAGCTTT
TCTTTTTCAA GTATAGATAA GTTTTCAACT GCTGGGTTGG TAACCAGATT GACTACAGAT
ATCACAAATG TACAAAATGC TTATCAAATG GCGTTAAGAA TGTTTGCAAG ACCTCCGCTA
ATGATGATTT CTGCTCTGGT AATGAGCTTT TATCTAAACG CAAGACTTGC TTTAATATTT
GTTGGAGCCA TTATTTTCCT TGGATTGGCA TTGTATTTTA TTATGACAAG TGCACATCCT
CATTTTCGTA AAGTGTTTAG AAAGTATGAT GATTTAAATG CCAGCGTACA GGAAAACCTG
ACCGGAATTC GTGCTGTTAA GGCTTATGTA AGAGAAGGGT ATGAAACAAA TAAATTTTAT
AAAGCCTCAA AAAGCATATA CGATAACTTT ATTAAAGCTG AGAAGATAAT TATATTTAAT
TCTCCTATAA TGCAGTTTAC AATGAATGCG AGTATATTAC TTTTGTCATG GCTTGGGGCA
AAGCTGATTG TGGCAAGTTC TATGTCTACA GGAGAGCTTA TGAGCTTCTT CACGTATACC
ACCAACATAT TGATGAGTCT TATGATGTTA TCTATGGTGC TTCTAATGAC AATTATAGCA
AGATCTTCTG CGGATAGGAT TGTAGAAGTA CTTGATGAAA AGAGCGATTT ATCCAACTGT
GATAAGCCAA TCTATGAAGT AAGGGACGGT TCTATAAGTT TTAGTGATGT TAATTTCAGT
TATAGTAAAA AAGTAGACAA CTTAATCCTT AAAAACATCA ATATAGAAAT AAAGTCAGGA
GAGACCATAG GGATTATAGG GGGAACAGGA AGTGGGAAAA CAACTCTTGT TCAGCTTATT
CCAAGATTAT ATGACATAAC ACAAGGCTCA ATAAAGGTCG GGGGTATTGA TGTAAGGGAG
TATGATATAG AAACTCTCAG AAATGAAGTA TCTATGGTGC TTCAGAAAAA TGTATTGTTT
TCCGGAACAA TAAAAGAGAA TTTAAGATGG GGAAATAAAG ATGCAACGGA TGAAGAATTA
ATTGCTGCCT GCAAACAGGC ACAAGCAGAC GAGTTTATAC AAAACTTCCC TGAGAAATAT
GATACATATA TTGAACAGGG CGGAACAAAT GTATCCGGGG GACAAAAACA AAGACTTTGT
ATTGCAAGAG CTTTGCTAAA AAAACCTAAA ATCTTGATTT TAGATGATTC AACAAGTGCT
GTGGACACTA AAACCGATGC CCTTATAAGA AAAGCATTTA AAGAAAGTAT TCCTGATACT
ACTAAAATTG TAATTGCACA GCGTATATCT TCAGTTCAGG AGGCTGATAA AATAATTGTG
CTCAATGACG GTAAGATAGA TGGAATTGGA ACACATGAGG AACTTTTAAA TTCAAATGAT
ATATATACTG AAGTTTACGA ATCTCAAGTG AAGGGGGCTG ATAGTGATGG GGAAAGGTAG
|
|---|
| Protein sequence | MIKKLLSYVR EFKRDSIVTP VYIALEVAME IAIPLLMGWI IDNGVEKGNM QYVLTVGAVM
VVVSVFALTF GVLAGKYAAR ASSGFARNLR KAMYDKIQSF SFSSIDKFST AGLVTRLTTD
ITNVQNAYQM ALRMFARPPL MMISALVMSF YLNARLALIF VGAIIFLGLA LYFIMTSAHP
HFRKVFRKYD DLNASVQENL TGIRAVKAYV REGYETNKFY KASKSIYDNF IKAEKIIIFN
SPIMQFTMNA SILLLSWLGA KLIVASSMST GELMSFFTYT TNILMSLMML SMVLLMTIIA
RSSADRIVEV LDEKSDLSNC DKPIYEVRDG SISFSDVNFS YSKKVDNLIL KNINIEIKSG
ETIGIIGGTG SGKTTLVQLI PRLYDITQGS IKVGGIDVRE YDIETLRNEV SMVLQKNVLF
SGTIKENLRW GNKDATDEEL IAACKQAQAD EFIQNFPEKY DTYIEQGGTN VSGGQKQRLC
IARALLKKPK ILILDDSTSA VDTKTDALIR KAFKESIPDT TKIVIAQRIS SVQEADKIIV
LNDGKIDGIG THEELLNSND IYTEVYESQV KGADSDGER
|
|---|
| |