| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ccel_0313 |
|---|
| Symbol | |
|---|
| ID | 7309204 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium cellulolyticum H10 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011898 |
|---|
| Strand | + |
|---|
| Start bp | 361501 |
|---|
| End bp | 365010 |
|---|
| Gene Length | 3510 bp |
|---|
| Protein Length | 1169 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 643607243 |
|---|
| Product | DNA-directed RNA polymerase subunit beta' |
|---|
| Protein accession | YP_002504680 |
|---|
| Protein GI | 220927771 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0086] DNA-directed RNA polymerase, beta' subunit/160 kD subunit |
|---|
| TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type
[TIGR02386] DNA-directed RNA polymerase, beta' subunit, predominant form |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.00151961 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTTGAAC TGAACAACTT TGATTCTATA AGAATAGGAT TAGCTTCTCC GGAAAAGGTC
AGAGAATGGT CAAAAGGTGA AGTAAAAAAG CCTGAAACTA TAAACTACAG AACTTTGAAG
CCTGAAAGAG ATGGTTTGTT CTGCGAAAGA ATTTTCGGCC CTCAAAAGGA CTGGGAATGT
CATTGCGGTA AATATAAAAG AATAAGGTAC AAGGGTATCG TTTGTGACCG TTGTGGTGTT
GAAGTCACAA GGTCAAAGGT AAGAAGAGAA AGAATGGGAC ATATCGAGCT TGCTGCTCCA
GTATCACATA TCTGGTATTT TAAGGGAATA CCAAGCAGAA TGGGTTTAAT CCTTGATATG
TCTCCAAGAT CCCTTGAAAA GATACTATAT TTTGCATCAT ATGTTGTAAT TGACCCAGGC
CAGACACCAT TGTCCAAAAA GCAAGTCTTA ACTGAAAAGG AATACAGAGA CAGTGTTGAC
AAGTTTGGAT TAAATTTCAG AGCCGCTATG GGAGCCGAAG CTGTAAAGGA ATTACTTGTT
GAGATTGATC TCGAAAGCCT TTCCAAGGAG TTAAGGACTG AACTGACTGA ATCTACAGGA
CAAAAGAGAA TCAGAGCAGT TAAGAGACTA GAGGTTGTTG AGGCTTTCAG ACTTTCAGGC
AATCGCCCTG AATGGATGAT CCTTGATGTA GTTCCGGTAA TTCCGCCTGA ACTTAGACCA
ATGGTTCAGT TGGACGGGGG AAGGTTTGCA ACGTCTGACT TAAATGACCT GTACAGAAGG
GTTATAAACA GAAACAACAG ATTGAAAAGA CTCCTTGATT TGGGAGCTCC TGACATAATT
GTAAGAAATG AAAAGCGTAT GCTTCAGGAA GCAGTTGATG CATTAATCGA TAATGGTAGG
AGAGGACGTC CTGTAACAGG ACCTGGAAAC AGACCTCTTA AATCACTTTC AGATATGCTT
AAAGGTAAGC AGGGTCGTTT CCGTCAGAAC CTTCTGGGTA AGCGTGTTGA CTACTCAGGA
CGTTCAGTTA TCGTTGTAGG CCCTGACTTG AAGATATTCC AGTGTGGTCT GCCAAAAGAG
ATGGCGTTGG AATTGTTTAA GCCGTTTGTA ATGAAGAAGC TTGTTAATGA TGGCTTGGCT
CACAATATAA AGAGTGCAAA GAGAATGGTT GAAAGAGTTA GAAATGAGGT ATGGGACGTT
CTTGAAGAAG TAATAAAAGA ACATCCTGTG TTACTCAACC GTGCTCCTAC ACTTCACAGA
CTCGGTATAC AGGCATTTGA ACCTGTACTG GTTGAAGGAA GAGCTTTAAA GCTTCATCCG
TTGGTATGTT CAGCGTACAA TGCCGATTTT GATGGTGACC AGATGGCGGT TCACGTTCCA
TTGTCTGCTG AAGCTCAATC AGAAGCAAGA TTCCTGATGT TGTCAGCAAA TAATCTGCTG
GCACCTAAGG ACGGTAAACC AATAACCGTT CCAACACAGG ATATGGTATT GGGAAGCTAC
TACCTAACAA TAGAAAAGTC AGATGAGCCA GGTGACGGGA GAGTATTCTG TGATATAGAC
GAAGTTCTTA TGGCATACGA GGAAGGTGCA CTTGGACTTC ACGCTCAGAT AAAGGTTAGA
GTAGAAAAAG AAATAGACGG TGTTAAAAAG AGAAAGATTA TCAGTTGTAC ACCGGGCAGA
CTTATATTTA ATGAAGCTAT TCCACAGGAT CTTGGTTTTG TGGACAGAAG TGACGAAAGT
AATCTTTTTG ATTTGGAAAT AAACTTCCTT GTGGGTAAGA AAGAGCTTGG AAAAATTATT
GATAAATGTA TCAGAGTACA CGGTACTACA AAAACTGCCG TAATACTTGA TAAAATAAAA
GCATTGGGCT TTAAGTACTC CACCAGAGGT GCTATTACAA TCAGTGTATC TGATATGGTA
ATACCTGAGA TAAAGAAGCA ATACCTGCAG GAAACTGAAA ATACAATTGA TAATATTGTT
AAGCAGTACA AGAGAGGACT TATTTCAGAT GAGGAAAGAT ACAATTCTGT TATAAGTGCA
TGGACAGAGA CAGGTGAAAG TATTACAAAA GCTCTTATTG ACAACCTGGA TAGATTCAAT
CCTGTGTACA TGATGTCACA GTCAGGAGCG AGAGGTAATA TCAATCAGAT CAAGCAGCTG
GCTGGTATGA GAGGTTTGAT GGCGGACACA TCGGGTAAAA CCATCGAGAT ACCTATTAAA
TCAAACTTCC GTGAAGGTCT TAACGTTTTG GAATTCTTTA TTTCGACCCA CGGAGCCAGA
AAAGGTTTGG CTGATACTGC ACTTAGAACC GCTGACTCAG GTTACCTGAC AAGACGTCTT
GTTGATGTAA GTCAGGATGT TATCGTAAGA GAACTTGATT GCGGTACTGA CAAGGGTATT
GAGGTTCATG ACATCAAGGA TGGTGGCGAA ACAATTGAAC CATTATCTGA GAGACTTGTA
GGAAGATATT TGACTGATGA CTTGTACGAT TCAGAGACAA ATGAGTTACT GGCATCAAAG
GACGAGGCCA TGGATGAGAA GAAAGCTTCA CTAGTAACTA AATCACTAGC TAAGTCCGGT
ATTAAGAAAG TAAAAATCAG ATCTGTACTT ACCTGTCATT CAGAGGTTGG CGTATGTGCC
AAGTGTTATG GTGCGAATCT GGCAACTGGT GATGCTGTCA ACATTGGTGA GGCTGTCGGT
ATAATTGCAG CACAATCAAT CGGAGAACCG GGTACACAGC TGACAATGAG AACATTCCAT
ACTGGTGGAG TTGCTGGTGA TGATATTACA CAGGGTCTCC CTCGTGTAGA GGAATTGTTT
GAAGCCAGAA AGCCTAAGGG GCTTGCAATT ATATCTGAAA TAGCAGGTGG CGTTAAGCTT
TCAGACTCTA AGAAGAAGAG GGAAGTAATT ATTACTTCCG AAGACGGTGA ATCAAAATCA
TACCAGATAC CTTATGGGTC AAGAATTAAG GTATATGATG GAGATGTTGT TGAAGCCGGT
GACGAATTGA CCGAGGGTTC CGTAAATCCT CATGATATCC TCAAAATTAA GGGTATCAAG
GGAGTTCAGT CTTACCTTCT TCAGGAAGTT CAGAGAGTTT ATAGAATGCA GGGTGTTGAC
ATTAACGATA AGCATATAGA AGTAATTGTT AGACAGATGA TGAGAAAAGT TAAGATTGAA
GACGCAGGAG ATACCAGTAT GCTGCCGGGA GGACTCGTTG ATATATTCGA GTTTGAGAAA
GAAAATCAAA AAGCTGTTGA AGCAGGGCTG GCACCTGCTA CAAGTGAGCG TACCTTACTT
GGTATAACCA AGGCATCGCT GGCTACCGAC TCATTCCTGT CTGCCGCATC CTTCCAGGAA
ACTACAAGGG TTCTTACAGA AGCCGCTATT AAGGGTAAGA TTGATCCTCT CGTAGGTCTA
AAGGAAAATG TAATTATCGG TAAGCTTATA CCTGCTGGTA CCGGTATGAG CCGATACAAG
GATATTAGTA TAAGCAGTGT AGTTGAATAA
|
|---|
| Protein sequence | MFELNNFDSI RIGLASPEKV REWSKGEVKK PETINYRTLK PERDGLFCER IFGPQKDWEC
HCGKYKRIRY KGIVCDRCGV EVTRSKVRRE RMGHIELAAP VSHIWYFKGI PSRMGLILDM
SPRSLEKILY FASYVVIDPG QTPLSKKQVL TEKEYRDSVD KFGLNFRAAM GAEAVKELLV
EIDLESLSKE LRTELTESTG QKRIRAVKRL EVVEAFRLSG NRPEWMILDV VPVIPPELRP
MVQLDGGRFA TSDLNDLYRR VINRNNRLKR LLDLGAPDII VRNEKRMLQE AVDALIDNGR
RGRPVTGPGN RPLKSLSDML KGKQGRFRQN LLGKRVDYSG RSVIVVGPDL KIFQCGLPKE
MALELFKPFV MKKLVNDGLA HNIKSAKRMV ERVRNEVWDV LEEVIKEHPV LLNRAPTLHR
LGIQAFEPVL VEGRALKLHP LVCSAYNADF DGDQMAVHVP LSAEAQSEAR FLMLSANNLL
APKDGKPITV PTQDMVLGSY YLTIEKSDEP GDGRVFCDID EVLMAYEEGA LGLHAQIKVR
VEKEIDGVKK RKIISCTPGR LIFNEAIPQD LGFVDRSDES NLFDLEINFL VGKKELGKII
DKCIRVHGTT KTAVILDKIK ALGFKYSTRG AITISVSDMV IPEIKKQYLQ ETENTIDNIV
KQYKRGLISD EERYNSVISA WTETGESITK ALIDNLDRFN PVYMMSQSGA RGNINQIKQL
AGMRGLMADT SGKTIEIPIK SNFREGLNVL EFFISTHGAR KGLADTALRT ADSGYLTRRL
VDVSQDVIVR ELDCGTDKGI EVHDIKDGGE TIEPLSERLV GRYLTDDLYD SETNELLASK
DEAMDEKKAS LVTKSLAKSG IKKVKIRSVL TCHSEVGVCA KCYGANLATG DAVNIGEAVG
IIAAQSIGEP GTQLTMRTFH TGGVAGDDIT QGLPRVEELF EARKPKGLAI ISEIAGGVKL
SDSKKKREVI ITSEDGESKS YQIPYGSRIK VYDGDVVEAG DELTEGSVNP HDILKIKGIK
GVQSYLLQEV QRVYRMQGVD INDKHIEVIV RQMMRKVKIE DAGDTSMLPG GLVDIFEFEK
ENQKAVEAGL APATSERTLL GITKASLATD SFLSAASFQE TTRVLTEAAI KGKIDPLVGL
KENVIIGKLI PAGTGMSRYK DISISSVVE
|
|---|
| |