| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caul_3514 |
|---|
| Symbol | rpsD |
|---|
| ID | 5900969 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Caulobacter sp. K31 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010338 |
|---|
| Strand | - |
|---|
| Start bp | 3791822 |
|---|
| End bp | 3792439 |
|---|
| Gene Length | 618 bp |
|---|
| Protein Length | 205 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 641564020 |
|---|
| Product | 30S ribosomal protein S4 |
|---|
| Protein accession | YP_001685139 |
|---|
| Protein GI | 167647476 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0522] Ribosomal protein S4 and related proteins |
|---|
| TIGRFAM ID | [TIGR01017] ribosomal protein S4, bacterial/organelle type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 0.512589 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCAAGC GCCATAGCGC CAAGTACAAG ATCGACCGCC GTATGGGCGA GAACCTCTGG
GGTCGGCCCA AGTCGCCGGT CAACCAGCGG TCCTACGGCC CCGGCCAGCA CGGCCAGCGC
CGCAAGCAGA AAGTCTCGGA CTTCGGTCTG CAGCTGCGCG CCAAGCAAAA GCTGAAGGGC
TACTACGGCA ACCTGACCGA GAAGCAATTC TCGCGCACCT ACGAAGAAGC CGCGCGCCGC
AAGGGCAACA CGGCTGAAAA CCTGGTGGGC CTGCTGGAAT CGCGCCTGGA CGCCATCGTC
TATCGCGCCA AGTTCGTGCC GACCGTGTTC GCCGCCCGCC AGTTCGTGAA CCACGGCCAC
GTCACCGTGA ACGGCAAGCG CGTCAACATC GCCAGCTACC GCTGCAAGAT CGGCGACGTC
ATCGCCGTTC GTGAAAAGTC GCGCAACATG GCGCTGGTCC TGGAAGCCGT CGCTTCGTCG
GAACGCGACT TCTGCGAATA CATCACCGTC GACGCCAAGG GCCTGGAAGC CAGCTTCATC
CGCGTGCCGG AGCTGTCGGA AGTGCCCTAT CCGGTGAAGA TGGAACCCAA CCTCGTCGTC
GAATTCTACG CCTCCTAA
|
|---|
| Protein sequence | MSKRHSAKYK IDRRMGENLW GRPKSPVNQR SYGPGQHGQR RKQKVSDFGL QLRAKQKLKG
YYGNLTEKQF SRTYEEAARR KGNTAENLVG LLESRLDAIV YRAKFVPTVF AARQFVNHGH
VTVNGKRVNI ASYRCKIGDV IAVREKSRNM ALVLEAVASS ERDFCEYITV DAKGLEASFI
RVPELSEVPY PVKMEPNLVV EFYAS
|
|---|
| |