| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caul_3314 |
|---|
| Symbol | |
|---|
| ID | 5900769 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Caulobacter sp. K31 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010338 |
|---|
| Strand | - |
|---|
| Start bp | 3595657 |
|---|
| End bp | 3597573 |
|---|
| Gene Length | 1917 bp |
|---|
| Protein Length | 638 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 641563820 |
|---|
| Product | 1-deoxy-D-xylulose-5-phosphate synthase |
|---|
| Protein accession | YP_001684939 |
|---|
| Protein GI | 167647276 |
|---|
| COG category | [H] Coenzyme transport and metabolism
[I] Lipid transport and metabolism |
|---|
| COG ID | [COG1154] Deoxyxylulose-5-phosphate synthase |
|---|
| TIGRFAM ID | [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.855639 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTCGCCT TGACCCCTCT CCTCGACACC ATCTCCTCGC CGGCCGACAC GCGCGGTTTC
TCCGTGGCCG AACTGAAGCA ACTGGCGAGC GAGGTGCGGG CCGAGACCAT CGACGCCGTA
TCCGTGACCG GCGGTCACCT GGGCGCGGGC CTCGGCGTGG TCGAGCTGAC CGTCGCCCTG
CACCACGTGT TCGAGACGCC CAAGGACATC GTCATCTGGG ACGTTGGCCA CCAAGCCTAT
CCGCACAAGA TCCTCACCGG CCGCCGCGAC CGCATCAAGA CCCTGCGCCA GGGCGGCGGG
CTGTCGGGCT TCACCAAGCG GGCCGAGAGC GTCTACGACC CGTTCGGCGC GGCCCACGCG
GCCACCTCGA TCTCGGCGGC GCTCGGCTTC TGCGCCGCTC GCGACGCCAA GGGCGAGAAC
AACAGCGTCA TCGCGGTGAT CGGCGACGGT TCGATGAGCG CCGGCATGGC CTATGAGGCG
ATGAACGCGG CGGTCGACAC CACCAAGCGC CTGATCGTCA TCCTCAACGA CAACGACATG
TCGATCGCCC CGCCGGTGGG CGGCATGAGC GCCTATCTGG CCAATCTCGT CTCGGGCGGC
GCCTATCGCA AGGTGCGCAA GCTGGGCAAG ACCGTGGTCG AGAAGCTGCC GACCCCGATC
CGCGACGCGG CCCGCAAGGC CGAGGAATAT GCCCGGGGCA TGGTCACCGG CGGCACCTTC
TTCGAGGAGC TGGGCTTCCA TTATGTCGGC CCGATCGACG GCCACGACAT GGACGCCCTG
GTCAGCGTGC TCAACAACGT CAAGCACTTC GACGAGAAGC CGGTCCTGGT CCACGTCGTC
ACCCAGAAGG GCAAGGGCTA CGCCCCGGCC GAGGGCGCGG CCGACAAGCT GCACGCGGTG
GTCAAGTTCG ACGTGGTCAC CGGCCAGCAG CACAAGGCGG CCGCCGGTCC GCCCAGCTAC
ACCAAGGTCT TCGCCCAGGA GCTGATCAAA CACGCGGCGG TCGACGACAA GATCATGGCC
ATCACCGCGG CCATGCCCTC GGGCACGGGC CTGGATTTGT TCGGCAAGGC CTATCCCGAG
CGCACCTTCG ACGTCGGCAT CGCCGAGCAG CACGCGGTGA CCTTCGCCGC CGGCCTGGCC
GCCGACGGCA TGAAGCCGTT CGTGGCGATC TATTCGACCT TCCTGCAGCG CGGCTATGAC
CAGGTCGTCC ACGACGTGGC GATCCAGCGC CTGCCGGTGC GCTTCGCCAT GGACCGCGCC
GGCCTGGTCG GCGCCGACGG CCCGACCCAT GCCGGCACCT TCGACCTCGG CTTCATGGGG
GCGCTGCCCG GCATGGTGCT GATGGCCGCC GCCGACGAGG TCGAGCTGGC CCACATGGTC
TCGACCGCCG TGGCCATCGA CGACCGCCCC AGCGCCTTCC GCTATCCCCG CGGCGAGGGC
CTGGGCCTGA CCATCCCCGA CCTGGCCGCC CCGCTGGAGA TCGGCAAGGG CCGCATCGTT
CGCGAAGGAA CCAGCGTCGC CATCGTCTCG CTGGGCACGC GCCTGGCCGA ATGCCTGAAG
GCCGCCGACC TGCTGGCCGC GCGCGGTCTC TCCGCCACCG TCGCCGACGC CCGCTTCGCC
AAGCCGCTGG ATGTCGACAT GCTGCTGCGC CTGGCCCGCG AGCACGAGGC GATCATCACG
GTGGAAGAGG GCGCCATGGG CGGCTTCGGA GCCTTCGTGC TGCAGGCCCT GGCCACGCAC
GGGGCTCTCG ATCGCGGCCT GAAGATCCGC ACCCTGGTGC TGCCCGACGT CTTCCAGGAC
CAGGACAAGC CCGACCTGAT GTACGCCCAG GCCGGCCTCG ACGCCGAGGG CATCCTGCGC
GGGGCGCTGT CGGCGCTCGG CATCGACAAC ATCAGCGCGG CGGGGCGGCG GGCCTAG
|
|---|
| Protein sequence | MLALTPLLDT ISSPADTRGF SVAELKQLAS EVRAETIDAV SVTGGHLGAG LGVVELTVAL
HHVFETPKDI VIWDVGHQAY PHKILTGRRD RIKTLRQGGG LSGFTKRAES VYDPFGAAHA
ATSISAALGF CAARDAKGEN NSVIAVIGDG SMSAGMAYEA MNAAVDTTKR LIVILNDNDM
SIAPPVGGMS AYLANLVSGG AYRKVRKLGK TVVEKLPTPI RDAARKAEEY ARGMVTGGTF
FEELGFHYVG PIDGHDMDAL VSVLNNVKHF DEKPVLVHVV TQKGKGYAPA EGAADKLHAV
VKFDVVTGQQ HKAAAGPPSY TKVFAQELIK HAAVDDKIMA ITAAMPSGTG LDLFGKAYPE
RTFDVGIAEQ HAVTFAAGLA ADGMKPFVAI YSTFLQRGYD QVVHDVAIQR LPVRFAMDRA
GLVGADGPTH AGTFDLGFMG ALPGMVLMAA ADEVELAHMV STAVAIDDRP SAFRYPRGEG
LGLTIPDLAA PLEIGKGRIV REGTSVAIVS LGTRLAECLK AADLLAARGL SATVADARFA
KPLDVDMLLR LAREHEAIIT VEEGAMGGFG AFVLQALATH GALDRGLKIR TLVLPDVFQD
QDKPDLMYAQ AGLDAEGILR GALSALGIDN ISAAGRRA
|
|---|
| |