| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cag_0868 |
|---|
| Symbol | |
|---|
| ID | 3747580 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chlorobium chlorochromatii CaD3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007514 |
|---|
| Strand | - |
|---|
| Start bp | 1198650 |
|---|
| End bp | 1200185 |
|---|
| Gene Length | 1536 bp |
|---|
| Protein Length | 511 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 637773399 |
|---|
| Product | RND efflux system, outer membrane lipoprotein, NodT |
|---|
| Protein accession | YP_379176 |
|---|
| Protein GI | 78188838 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1538] Outer membrane protein |
|---|
| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATGTTAT TCCCGCGAAA GCGGGAATCC AGAAAAATCT TAATGGTTGG ATTGAGCACA
ACAAAAAGAG TAAGAACTAA AATCATTATG AAGAAAATCA TTTGGCTTGC TCTGCCAACA
GCCATTGTGC TTGCAGGGTG CAGTTCCTCC CATACCTTAC AATCCCCAAC CATAGCGCTA
AACGATCGCT ATCAGCAAAA CAGCGCACAT CCGCAACTCA CGGAAGCCGA GGGGCAGCAG
CAACAGCTTG TAGTCGAGAG TGTTGCGGCA CGCTGGTGGG AAGCCTTTGG TTCACCCAAA
CTGAATCGCT TGATTGAGCA AAGCCTCAAG CAAAACCCAA CGCTTGCCGC CGCTGAAGCC
ACACTTCGCC AAGCCGAAGC ATTAGCAAAT GCAAAGTACA ACAGCACCCT CTATCCCCGC
CTTGACGCCG TTGGCAGTGC GCAACGCTTG CAACTCAACA ACAGCCGCAA CGGAGTGGAA
GGAGGCGAAA AGCGCTTTAA TCTTTACAAT GGTTCACTCA GCAGCAGTTA CAATTTCGAC
CTTTCAGGAG CCAACAATCG CCAACTTGAT GCCTTGCAAG CCAAAGCAAA CTACCAACAC
TACCAATTAG CGGGCGCACG GTTACGTCTT GCTACAGAGG TGGCAGTTAC CGCTATTCGT
CAAGCGCAAC TTGGCGCACA AATGGAAGCG TTAGAGCGCC TTATTGCGCT CGGCAATGAG
CAGCTTACCA TTAACCGCGA ACGCTTGCGG CTTGGAGCAA TTGCAAGCCA CGAATTGCTT
GAAGTAGAGC GCATGGTTGC CGAACAACGT GCAGCATTGC CCGCTATGCG CCACGCCTAC
CAGCAAAGCC GCCATGCCCT TGCCTTGCTT GAAGGTTCAA CTCCCGACAA CGCCACCCTA
CCAACCTTTA CGCTTGCGGA ATTCCAGCTT CCCGCAACAC TATCCATGCG CATTCCATCA
CAATTTGTGC GCTATCGCCC CGACATTCAA GCGGCTGAAG CCTTAATGAT GGCAGCAAAT
GCCGAGTATG GGGCTGCCGC TGCAAAAGCT TATCCTCAAC TTACACTTTC AGCCTCGCTT
GGCTCACAAG CCCTTACCAC AGCCGCACTT TTTGGCAGCG GTACCGCCGT GTGGAGCGTT
GCGGGGCAGC TTGTGCAACC GCTCTTTAAC CCATCACTTG GGGATGAAAA AAAAGCCGCC
AACGCCGCCT TTGAAGCCGC TACGGCACAC TACCGCCAAA GCATTCTTGC GGGACTTCGT
GATGTTGCCG ACCTGCTTTC AGCGCTTTAT AACAATGCCA TCGCACTTGC CGCCTTAGCC
TCAGGTGCAG CTTTCGCCGA TGAGCAAGTT GCCCTTACGG AGCAACGCTA CAAGTTAGGG
GCAGCCTCGT ACCTTGAGGT GGTGCAAGCA CAAAGCGAAG CCACACAGCT TCAGCTTGAG
CTGCTTGCTG CCCGCGCCCA ACGCTTATCA AATAGCGCAG TGCTTTATCA AGCTATGGGT
GGGGGTGAAA TGCTTTCGCC GTCGGGAAGG GAGTAA
|
|---|
| Protein sequence | MMLFPRKRES RKILMVGLST TKRVRTKIIM KKIIWLALPT AIVLAGCSSS HTLQSPTIAL
NDRYQQNSAH PQLTEAEGQQ QQLVVESVAA RWWEAFGSPK LNRLIEQSLK QNPTLAAAEA
TLRQAEALAN AKYNSTLYPR LDAVGSAQRL QLNNSRNGVE GGEKRFNLYN GSLSSSYNFD
LSGANNRQLD ALQAKANYQH YQLAGARLRL ATEVAVTAIR QAQLGAQMEA LERLIALGNE
QLTINRERLR LGAIASHELL EVERMVAEQR AALPAMRHAY QQSRHALALL EGSTPDNATL
PTFTLAEFQL PATLSMRIPS QFVRYRPDIQ AAEALMMAAN AEYGAAAAKA YPQLTLSASL
GSQALTTAAL FGSGTAVWSV AGQLVQPLFN PSLGDEKKAA NAAFEAATAH YRQSILAGLR
DVADLLSALY NNAIALAALA SGAAFADEQV ALTEQRYKLG AASYLEVVQA QSEATQLQLE
LLAARAQRLS NSAVLYQAMG GGEMLSPSGR E
|
|---|
| |