Gene Cag_0459 details

Gene Information

• Locus tag: Cag_0459
• Symbol: rho
• ID: 3747384
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Chlorobium chlorochromatii CaD3
• Kingdom: Bacteria
• Replicon accession: NC_007514
• Strand: +
• Start bp: 537944
• End bp: 539233
• Gene Length: 1290 bp
• Protein Length: 429 aa
• Translation table: 11
• GC content: 45%
• IMG OID: 637772992
• Product: transcription termination factor Rho
• Protein accession: YP_378775
• Protein GI: 78188437
• COG category: [K] Transcription
• COG ID: [COG1158] Transcription termination factor
• TIGRFAM ID: [TIGR00767] transcription termination factor Rho

Plasmid Coverage information

• Num covering plasmid clones: 32
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCGAACA ATCCTGTTGT TAAAGGTTTG GATATTAATC TTCTCCAAAG AAAAAAGGTG 
GCTGAACTTC ATGCTCTTGC TAAAGAGCTG GGCGTTATGG CTGCTGGCTT GCGTAAAGAA 
GAGCTGATTT TTAAAATTAT TGAAGCGCAG GCGCAGCGAA CTAATGACCC CGATAGTGCA 
ACGGTTATGG TGAACACGGG TGTTCTGCAA GTGATTCCCG AAGGCTACGG TTTTTTACGC 
TCTGCAAACT ACAACTACCT CTCCTCACCC GACGATATTT ATGTTTCCCC TTCGCAAATT 
AAGCGCTTTA ATATGCGAAC AGGCGATACG GTATCGGGGC AGGTCCGAGC GCCAAAAGAG 
GGTGAACGAT TTTTTGCCTT GCTTAAAATC AACACCATTG ATGGCAACGA TCCTGAAATT 
ACTCGCGAGC GTCCTTTCTT TGAAAACCTC ACTCCTCTTT TTCCTACCCA GCGTCTCCGA 
CTTGAAACTC GCCAAAGCGA AATGTGCGGG CGCATTATGG ATATTTATAC CCCTGTGGGT 
AAAGGGCAGC GTGGTTTAAT TGTTGCTCAG CCAAAAACGG GTAAAACCAT GCTCTTGCAA 
ATGATAGCTA ACGCTATAAT TCAAAATCAT CCCGAAGTAT ATCTTATTGT TTTGTTGATA 
GATGAGCGTC CTGAAGAGGT TACCGATATG GCGCGTAGCG TAGCGGCTGA AGTGGTAAGC 
TCAACCTTTG ATGAAGATCC CGAACGCCAT GTGCTTGTTG CTGATATGGT GCTTGAAAAA 
GCAAAGCGTC TTGTTGAAGT TGGGCGCGAC GTTGTGGTGT TACTTGACTC CATTACCCGT 
CTTGCACGAG CGCATAACAC CATTATTCCT CATTCAGGCA AAATTCTTTC GGGTGGTATT 
GATGCCAATG CGCTTACCAA GCCAAAGCGC TTTTTTGGTG CAGCTCGCAA CATTGAAGAG 
GGGGGAAGCT TAACCATTAT TGCCACCGCT TTAGTAGATA CGGGTTCGCG TATGGATGAT 
GTTATTTTTG AAGAATTTAA AGGCACAGGC AATATGGAGT TGGTGCTTGA TCGTCGCTTA 
TCGGAGCGAC GTATTTTCCC ATCCATTGAT ATTTTGCGTT CAGGGACGCG CCGTGAAGAG 
CTGCTTTTTT CGCAAGAAGA GCTTTCGCGT ACTTGGTTGC TGCGTAAATA TCTTGCCGAT 
AAAAATCCTG TTGAGTGTAT GGAGTTTATG CGCGAGAAAA TGGCAGACAC CAAAGACAAT 
AGAGATTTCT TTAAATACAT GAATGCGTAA 

 

Protein sequence

MANNPVVKGL DINLLQRKKV AELHALAKEL GVMAAGLRKE ELIFKIIEAQ AQRTNDPDSA 
TVMVNTGVLQ VIPEGYGFLR SANYNYLSSP DDIYVSPSQI KRFNMRTGDT VSGQVRAPKE 
GERFFALLKI NTIDGNDPEI TRERPFFENL TPLFPTQRLR LETRQSEMCG RIMDIYTPVG 
KGQRGLIVAQ PKTGKTMLLQ MIANAIIQNH PEVYLIVLLI DERPEEVTDM ARSVAAEVVS 
STFDEDPERH VLVADMVLEK AKRLVEVGRD VVVLLDSITR LARAHNTIIP HSGKILSGGI 
DANALTKPKR FFGAARNIEE GGSLTIIATA LVDTGSRMDD VIFEEFKGTG NMELVLDRRL 
SERRIFPSID ILRSGTRREE LLFSQEELSR TWLLRKYLAD KNPVECMEFM REKMADTKDN 
RDFFKYMNA