| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_8747 |
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| Symbol | |
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| ID | 8340139 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Catenulispora acidiphila DSM 44928 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013131 |
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| Strand | + |
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| Start bp | 10142205 |
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| End bp | 10145189 |
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| Gene Length | 2985 bp |
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| Protein Length | 994 aa |
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| Translation table | 11 |
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| GC content | 74% |
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| IMG OID | 644961838 |
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| Product | Peptidoglycan-binding LysM |
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| Protein accession | YP_003119403 |
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| Protein GI | 256397839 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3846] Type IV secretory pathway, TrbL components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 0.358141 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGGACG ACGGGGGCGT CGCGGGGTCG CGCGCGCTGA CGGGGTATGA GCCGGAGACT
CCGGAGTATC AGACGTATGT CGTGCGCAAG GGCGATTCGC TGTGGCGGAT CGCCGAGGAG
CAGTTGGGCG ATCCCCGCCG GTTCGCGGAG ATCGCCGAGC TGAACGACGG CCGCCGGATG
CCGGACGGGA CGGTGTTCAG CTACGTCGAG TTCCTGCAGT CGGGGTGGGT GCTGATCATG
CCGCCGGACA TGGGGCGGCA CAACCCGGCG CTAGGCGCCG AGCCGGTGCA GCTGGCACTG
GAGGCGAGCG TCAGCAGTGT CGGCTCGGCG GCGTCGGCGG TCGGCGCGCT GGCTCGCCGG
GAGTCCACGT TCGCCACCAC GCGCCACGAC TCCGGGAAGA CGGTGTCGGC GACCGGCGGC
CTGCTGGCGG CAGGCGTGCT GAGCACCTTG GGCGACCGGC GGCTGCGCAA GGTCATGCGG
CGGCGTCCCG GGGAACTGAT CTCGATGCGG CAGCCGGGAA GCTGGGAGCT GGAACTGAGC
CGGGTCGACA ACCCGACCGG CCAGGTCCTC GTCGACGCCG CTCTCAGAAC CCTGAGCGCC
AAGCTCACGA AGGCGGACCG CGGACTGCCG GACATCACGA TGACGGTGCT CAAGCCGCAC
GGACTCGAGC TGCACCTGGC GCGCCCCCAG CCGCCGGTCG CCCCCTTCTA CGCCGACCCC
CGGCAGCCGG CGGTGTGGAT CTGCCCGCTC GGAGCGCCGG TCGGCTCGCC GCCGAGCCAC
GCACCGGCGC CCTACCCGGC GCTGGTCTCC CTCGGCTTCG ACGAGGACGA CGACACGGTC
CTGGTCGACC TGGAGGCCAC CGGCGGGGTA TCGCTGCTGG CGCCGGAGGC CGAGGCGGTG
TCGGTGCTGC GCGCGATGGC CGTGGAACTG GCGACCGGGA TGGCGGCGGA GCAGGTGGAG
GTGACGCTCG TCGGCTTCGG GGCGGAGCTG CCGGACCTGT TCACGCCCGG GACGCTGAAC
CACACCGAGG ACTTGGCGGG CGCCGTCGGG GACCTGGCGC GATGGTCGGC GGACGTCGAG
GCCGTCCTCG ACCGGCGCGG CGTCACGGTA CGCAAGGCGC GAACGCACCC GGACGAGGAA
CTGGCGCCGA TCACGAAGAC GCATGTCCTG CTGACGGCGA CGGTGCCGGA CGCCCGGCTG
ACCGCCCGGC TGCGGCATCT GCTGTCGGGG CGGCCGCGAA CGTCGATCGC GGTGGTGGCG
GCGGCGGGGG ACCGGGAGCA GGTGCTGTCG GCGTGGACGA TCAGCGGGCC GGTGTTCCAT
GCGCCGCGCG CGGGGGGTGC TGGGGCTGGC GGGACGGCGG GGGCAGCGGG AGTAGGCGGC
GCGGCTGGGG CGGCGGGGAC TGGCAGCATG GCGGAAGCTT GGAGGGCGGC GGGAGTAGGC
GGCGCGGGCG CGGCGGCGGA AGTGGGCAGC GTTGCTCGGG CTGCGGGAGC GGGCCGGGCG
GCGGGGGCAG GCGGCGCGGC GGGAGTAGGC GGCGCGTCCG GGGCAGCGGG AACGGCAGGA
GCTTCGGGCA CGGCAGGCAT CGGGCTGCGG GTGCAGGCGT TGCGGGAGGA GCGCTACGAG
GCTGTGGTGC GGGAGTTGGC GGCGGCGGAT TCGGAGCAGG AGAAGCCGGC GCCGCGGGAT
GGGGCTTTCA ACTTGCCGGC TTCGGGTGCG GCGCAGCGGG AGGTTTCGGG GGCGAAGACG
CCGTTGCCGA AGCGGAAGCC TTCGCATCCT CGGCGGCATG TGGCGGGCGC CGACGGGGGT
GCGGGTTCGG AGCTGAGCGC GGGCTTTGGC GGCGGTTCCG AGCTGCGTCC GCCGGCACGC
GCCGAGCTGA TCGCGACGCC GGATCCGGTG CAGCCGAACC GATTTCGCGT GCCTGTCGAC
GACCTGTTCC GGGTCGAGGC GCTGTTGCCG ACCGCGTTGC CGACGACCGC CGCGCACCTG
CCGTTGCCGG GAGCGGCGAA GGAAGCACGG CTGGCGCTGA GGCCGGCGAA CCTGCCGCAG
TTCGATGCGG CGGCAGATGG GGACGAGGAG CCGCCACCGC CTCGTGCGGA GGACCGGGTG
GTCGGGATCG AGACGGATCC GGTGGCGCCT GCGCCGTCTT CGCTGGATGC GTTTCCCGCG
CCCGCTGGGG AGGACGCGCG CGGGGCAGCG TCGCGCAAGC CGGGGCAGTG GCACGGCGCC
TATTGGAGCC AGCGCCGTGC GGCTGCGGCG GGACTGCCGA AGCCGGGCGA CTTCGACGCG
CCGTCGGCGG CGTACGCGAT CGACGTCCTG GGCCCGATCA TGCTGGCCGG CATCGGCACG
GCAGAGGGCA CGGCGGACCT CGCGGAGGTC GCGGCGTACG CGATGCTGCA TCCCGGATGC
TCGGTACAGC AGATCGCCCA CGACTTGTGG CCGGCGCGCA CCGGCGCGGT GGGGCTCGTG
GACGCGCAGG TCATCCAGCT CCGCGAGCTG CTCGGCACGG ACGCCCACGG CGAGCAGCTG
CTCCGGGTCA CGCCCGAGAG CGTGACCCTG GCGCCGACAG TGTCCTGCGA CTGGCTGGAG
TTCCTGCATC GCGCGCAGAA CGGCGAACTC GTCGGCGCCC TCAGCCTGGT CCGCGGCCGC
CCCTTCGAGG ACGCACCCCT CCGCCGCTAC GGCTGGGCCG AAACCCTCCG CCACGAAATG
GCGGCACTCG TCATCGACAC CGCGCACTAC GTCGCCGAGG GATGCCTGCG CGAACAGAGC
CCCCGCAACG CCCGCAAGGC AGCCCTCCGC GGCCTAGCGG CGGCACCCGA ATCAGAACTC
TTGTACCGCG ACCTCCTCGC CGCCCTGGCC GCCCTCGGCG ACCTCCCCGC CGCCCGCCGC
CACGCCGACA CCCTCCTGGA CTACGCCGAC CGCGAAGGAC TCCCGCTCCA GCCGGAAACC
GCCGCGATGC TGCGAGACGT GGCACAGGCT GCGGCACGAG GGTGA
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| Protein sequence | MADDGGVAGS RALTGYEPET PEYQTYVVRK GDSLWRIAEE QLGDPRRFAE IAELNDGRRM
PDGTVFSYVE FLQSGWVLIM PPDMGRHNPA LGAEPVQLAL EASVSSVGSA ASAVGALARR
ESTFATTRHD SGKTVSATGG LLAAGVLSTL GDRRLRKVMR RRPGELISMR QPGSWELELS
RVDNPTGQVL VDAALRTLSA KLTKADRGLP DITMTVLKPH GLELHLARPQ PPVAPFYADP
RQPAVWICPL GAPVGSPPSH APAPYPALVS LGFDEDDDTV LVDLEATGGV SLLAPEAEAV
SVLRAMAVEL ATGMAAEQVE VTLVGFGAEL PDLFTPGTLN HTEDLAGAVG DLARWSADVE
AVLDRRGVTV RKARTHPDEE LAPITKTHVL LTATVPDARL TARLRHLLSG RPRTSIAVVA
AAGDREQVLS AWTISGPVFH APRAGGAGAG GTAGAAGVGG AAGAAGTGSM AEAWRAAGVG
GAGAAAEVGS VARAAGAGRA AGAGGAAGVG GASGAAGTAG ASGTAGIGLR VQALREERYE
AVVRELAAAD SEQEKPAPRD GAFNLPASGA AQREVSGAKT PLPKRKPSHP RRHVAGADGG
AGSELSAGFG GGSELRPPAR AELIATPDPV QPNRFRVPVD DLFRVEALLP TALPTTAAHL
PLPGAAKEAR LALRPANLPQ FDAAADGDEE PPPPRAEDRV VGIETDPVAP APSSLDAFPA
PAGEDARGAA SRKPGQWHGA YWSQRRAAAA GLPKPGDFDA PSAAYAIDVL GPIMLAGIGT
AEGTADLAEV AAYAMLHPGC SVQQIAHDLW PARTGAVGLV DAQVIQLREL LGTDAHGEQL
LRVTPESVTL APTVSCDWLE FLHRAQNGEL VGALSLVRGR PFEDAPLRRY GWAETLRHEM
AALVIDTAHY VAEGCLREQS PRNARKAALR GLAAAPESEL LYRDLLAALA ALGDLPAARR
HADTLLDYAD REGLPLQPET AAMLRDVAQA AARG
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