| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_7342 |
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| Symbol | |
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| ID | 8338712 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Catenulispora acidiphila DSM 44928 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013131 |
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| Strand | + |
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| Start bp | 8525838 |
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| End bp | 8526866 |
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| Gene Length | 1029 bp |
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| Protein Length | 342 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 644960423 |
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| Product | MscS Mechanosensitive ion channel |
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| Protein accession | YP_003118010 |
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| Protein GI | 256396446 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0668] Small-conductance mechanosensitive channel |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.00546474 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | GTGTCCGCAG TTTCAGCTAT CGTCCTGGCA TCCAAGAGCC CGGCGCCGAG CCCGCCGTCG
GTCACTCCGA CCACCTCGCT CAGTGACAAG GCGAAACACG TGAGCAACTG GTTCAGCGAT
CACTCGGGCC TGATCGTCTC CCACGCGATC GCCATCGTCG CGATCATCAT CGTGGCGATG
GTCCTCCGGA ACGTCACCCG GACCTTCATC CGCCGGGCCG TGGAGAAGGC CGCGGTGCGC
GCCGAGACCA AGCCGGGGCG GTTCCTGGAG GCCGGCCTCC TGATGGGTGC CGAGCGGCGG
ATGCAGCGCA CCCGCGCCCT CGGCGGCGTG CTGGGCAGCA TCGCCAGCGT CGCCATCATG
ATCGTCGCGG CGCTGATGAT CATCGACCAG CTGGACATCT CGACCGGGCC GATCCTGGCC
TCGGTCGGCG GCCTGTCGGT GGCGATCGGC TTCGGCGCCC GCGACGTGGT CACCGACCTG
CTCGCCGGGA TCTTCATGAT CATGGAGGAC CAGTACGGGG TCGGCGACTT CATCGACGCC
GGCGACGCCC GGGGCACCGT GGAGGAGGTC GGGCTGCGGA TCACCCAGCT GCGCGACATC
GACGGCGTAG TCTGGTACGT CCGCAACGGC ACGGTCAAGC GGATCGGCAA CCAGTCGCAG
GGGCACGCGC GCGCCATCGT GGACGTCCCG GTCGCCTACA CCGAGAACCC CTCGCGGGTC
AGCGACATCA TGGTCGAGAC CGCGCACCAG CTCTTCGAGG ACCCGCTGTG GAAGGCCAGC
TTCCTGTCGG AGGCGCCGAC CATCGCCGGC ATCGAGTCCA TCGAGGGCGA CCACATGATG
ATGCGCGTCA GCATGCGCAC CGCTCCGCGC ACCAGCTCGG AGGTCGCGCG GGAACTGCGC
TACCGGCTGC TCGCGGCGTT CGACGAGGCC GGGGTCAAGG TCGGCCTCAC CGCGGCCAGC
GGGACGAACG GCGCCGAGGA CGGCTTGCGG CGGGGCGGAA CGGTGCCGGC GCCTACCATC
AACCCCTGA
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| Protein sequence | MSAVSAIVLA SKSPAPSPPS VTPTTSLSDK AKHVSNWFSD HSGLIVSHAI AIVAIIIVAM
VLRNVTRTFI RRAVEKAAVR AETKPGRFLE AGLLMGAERR MQRTRALGGV LGSIASVAIM
IVAALMIIDQ LDISTGPILA SVGGLSVAIG FGARDVVTDL LAGIFMIMED QYGVGDFIDA
GDARGTVEEV GLRITQLRDI DGVVWYVRNG TVKRIGNQSQ GHARAIVDVP VAYTENPSRV
SDIMVETAHQ LFEDPLWKAS FLSEAPTIAG IESIEGDHMM MRVSMRTAPR TSSEVARELR
YRLLAAFDEA GVKVGLTAAS GTNGAEDGLR RGGTVPAPTI NP
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