Gene Caci_5890 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCaci_5890 
Symbol 
ID8337252 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCatenulispora acidiphila DSM 44928 
KingdomBacteria 
Replicon accessionNC_013131 
Strand
Start bp6797749 
End bp6798516 
Gene Length768 bp 
Protein Length255 aa 
Translation table11 
GC content72% 
IMG OID644958994 
Productprotein of unknown function DUF164 
Protein accessionYP_003116589 
Protein GI256395025 
COG category[R] General function prediction only 
COG ID[COG1579] Zn-ribbon protein, possibly nucleic acid-binding 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones25 
Fosmid unclonability p-value0.498958 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGAAGACAA GTCAAGAGAG AGGCACTGCC CTGAACGCGA ACCCCGCCGA CCAGCTCCGT 
CTGCTGGATC TGCACGGTCT GGACGTGCGC CTGGCACAGC TGGCGCACAA GCGGCGCACC
CTGCCGGAGC TGGCCGAGGC CGAGAAGGTG GACCGGCGCC TGGCGGACCT GCGCGACGTC
CTGGTCGCCG CCCAGACCGC CGAGGGCGAC ATCGCGCGCG AGCAGAAGAA GGCCGAGGCC
GACGTCGAGC AGGTGGTGAA CCGCGCCACC CGCGACCGGC AGATGCTGGC CTCCGGCCGC
GGCTCGGCCA AGGACCTGGA GAACATCCAG CACGAGCTGG AGACCCTGGC CCGCCGCCAG
TCCGACCTGG AGGACGTGGT CCTGGAGGTC ATGGAGCGCC GCGAGGCGGC CCAGACCCGC
GTGGCCGAGA TGACCGTCCA GCGCGACGAG GCCCAGACCC GCCGCGACGA GGTGACCGCG
GCCCTGGCCG CCGCCGCCGG GCAGATCGAC CGCGACATCA CCGCGGTGAG CGCCGAGCGC
GAGACCACCA GCGGCGTCAT CCCCGAGGAC CTGCTGGCCC TGTACGAGCG CATCCGCAAG
GACAACAGCG TGGGCGCCGC GGCCATCCGC CAGCGCCGCT GCGACGGCTG CCGCCTGGAG
CTGGACATCA GCGAGGTGAA CGCGATCAAG GCCGCGGCGC CGGACCAGAT CGTCCGCCAC
GACTCCTGCG GCAGCATCCT GGTGCGCGTC CCCGAATCGG GCATCTAG
 
Protein sequence
MKTSQERGTA LNANPADQLR LLDLHGLDVR LAQLAHKRRT LPELAEAEKV DRRLADLRDV 
LVAAQTAEGD IAREQKKAEA DVEQVVNRAT RDRQMLASGR GSAKDLENIQ HELETLARRQ
SDLEDVVLEV MERREAAQTR VAEMTVQRDE AQTRRDEVTA ALAAAAGQID RDITAVSAER
ETTSGVIPED LLALYERIRK DNSVGAAAIR QRRCDGCRLE LDISEVNAIK AAAPDQIVRH
DSCGSILVRV PESGI