| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_5513 |
|---|
| Symbol | |
|---|
| ID | 8336873 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Catenulispora acidiphila DSM 44928 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013131 |
|---|
| Strand | - |
|---|
| Start bp | 6363905 |
|---|
| End bp | 6364987 |
|---|
| Gene Length | 1083 bp |
|---|
| Protein Length | 360 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 644958617 |
|---|
| Product | RNA ligase, DRB0094 family |
|---|
| Protein accession | YP_003116213 |
|---|
| Protein GI | 256394649 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | [TIGR02306] RNA ligase, DRB0094 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.00942414 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 0.0440545 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCGACCC TGCGAGTCAC CGCCGAACCC CTGACGATCC ACGGTCACCC TGACGCCGAC
GCGTTGGAGT TGGCGCAGGT CGGGCTCTAC CGCGCCGTTG TGGCCAAGGG CGCCTACCGG
ACCGGTGACT TCGCGATATA CATCCCCGAG CAGTCCGTGC TTCCGGCCGG GCTGATCGAG
GAGCTGGGAC TGACCGGGCG GCTGGCGGGG TCGGGCAAGG ACCGGGTGCG GGCGATCCGG
CTGCGCGGGG AGCTGTCGCA GGGCATCGTG TGCCGGCCGA AGGCGCTGGC GGGGGTCGAT
CTGGCTGCCG CGCACGCTGC CGGGGAGGAC TTCGCCGAGC TGCTGGGCGT CGTGAAGTGG
GTGCCGCCGG TGCCGGTCAC CATGTCCGGG GACGTGGTCT CCGCCGCCGA CCTGCTGCCG
TGGACCGACA TCGAGAACAT CGCGCGCTAT CCCGGGATCT TCGAGCCCGG CGAGCCGGTG
TCCGCGACCG AGAAGGTGCA CGGAACGTGC TGCCTGCTCA CGTACCTGGC CCAGACCGGC
GAGTATCTGG TGTCGTCCAA GGGCTTCGGG TCCAAGTACC TGGCTCTGGT CGAGAGCGAC
AAGAACCTGT ACTGGCGGAC CGCGCGCGCC CACGGAGTCC CGGAAGCCGC CGCGAAGATC
GCCGAAGCCT ACGGCGCGCG CCGGGTCGGC ATCTACGGCG AGGTCTACGG CAAGGGCGTG
CAGGACCTCG CGTACGGCGC CAACGCCCAG AGCACACCGG GCTTCGCCGC GTTCGACGTC
TGCCTCGACG TCGAGGGCAC CGTGCGCTGG CTCGGCGCCC CGGAATGGTC CCAGGCGCTG
AAGGACACCG GCATCGACAT CCCGCTGGTG CCCACGCTCT ACGAAGGCCC TTACGATGAG
GCGCTGCTGC TGGCTCTGGC CTCCGGCAAG GAGACCGTCA GCGGCACGAG CGCCCACATC
CGCGAGGGCA TCGTCGTGCG CTCGCAGCAG GAGCACGGCA ACGCGGTGGT GGGGAGCCGC
ACGATCGGCA AGATCGTGTC GGCAGAGTAC GTGACGCGCA GCGGGGGGAC CGAGTATGAG
TGA
|
|---|
| Protein sequence | MSTLRVTAEP LTIHGHPDAD ALELAQVGLY RAVVAKGAYR TGDFAIYIPE QSVLPAGLIE
ELGLTGRLAG SGKDRVRAIR LRGELSQGIV CRPKALAGVD LAAAHAAGED FAELLGVVKW
VPPVPVTMSG DVVSAADLLP WTDIENIARY PGIFEPGEPV SATEKVHGTC CLLTYLAQTG
EYLVSSKGFG SKYLALVESD KNLYWRTARA HGVPEAAAKI AEAYGARRVG IYGEVYGKGV
QDLAYGANAQ STPGFAAFDV CLDVEGTVRW LGAPEWSQAL KDTGIDIPLV PTLYEGPYDE
ALLLALASGK ETVSGTSAHI REGIVVRSQQ EHGNAVVGSR TIGKIVSAEY VTRSGGTEYE
|
|---|
| |