| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_5425 |
|---|
| Symbol | |
|---|
| ID | 8336779 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Catenulispora acidiphila DSM 44928 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013131 |
|---|
| Strand | - |
|---|
| Start bp | 6251043 |
|---|
| End bp | 6252239 |
|---|
| Gene Length | 1197 bp |
|---|
| Protein Length | 398 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 644958523 |
|---|
| Product | Thiamin pyrophosphokinase catalytic region |
|---|
| Protein accession | YP_003116125 |
|---|
| Protein GI | 256394561 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG4825] Uncharacterized membrane-anchored protein conserved in bacteria |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 0.519507 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACTCACC CGCCGCACCG CCTCCGACGC CGAGCCCAGG CCCGCCAGCC AGACTTGCCG
GGTCTGTCCG GCGTTGCCCG GGTGGACCGG CGGACCAAGG ACCTGACCAA GCGGCTGCGG
GCCGGCGAGA TCGCGCTGAT CGACCACGTC GATCTGGACG GTCCGGCGGC CGAGGCGCTG
TTGGCGTGCA AGCCCGCCGC CGTGGTGAAC GCCGCCAAGT CGCTGTCCGG CCGCTATCCG
GCGATGGGAC TGGAGATCCT GCTCTCCGCC GGCATCCCGG TCGTGGACGA GGTCGGGTCC
GCCGTGCTGG AGCGGATCGC CGAGGGCGAC ATGGTGCGGC TCGACGGCAA CGTCGTGCTG
TGCGGCAGCA CCCCGATCGC GGTCGGCAAG GCGGTGGAGC TCTCCGAGGT GGTCGAGGCG
CTCGCCGAGG CGCGCTCGAC GGTCTCCGAG CAGATCGAGG CGTTCACCGC GAACACCATG
GAGTACCTGC GCGCCGAGCG CGATCTGCTG TTCGACGGCG TCGGCGTCCC GGACATCACC
ACCCAGCTCG ACGGCCGGCA TGTGCTGATG GTGGTCCGCG GCACCCACCA CAAGGAAGAC
CTGGCGGTCC TGCGCCCCTA CATCCGCGAG TACCGGCCGG TGTGCATAGG AGTCGACGGC
GGCGCCGACG CACTCCTGGA GGGCGGCCAC CGCCCGGACA TCATCGTCGG CGACATGGAC
TCGGTCTCCG ACGAGGCACT GGCCTGCGGA GCCGAGCTGA TCGTGCACGC CTACCCCGAC
GGAACCGCCC CCGGGCTCGA CCGCGTCACC GCCCTCGGAC TCCCGTGCGT GGTCTTCCCA
GCAGCCGGCA CGAGCGAAGA CGTGGCGATG CTCCTCGCCG ACGACAAGGG CGCCTCCCTG
ATCGTCGCCG TCGGCGGCCA CAGCAACCTG GTGGAATTCC TCGAGAAGGG CCGAGGCGGC
ATGGCCTCGA CCTTCCTGAC CCGCCTCCGC GTAGGCGGCA AACTCGTCGA CGCCAAGGGC
GTATCACGCC TCTACCGCAG CCGTATCTCC ACAGCCTCCC TGGCCGCCCT GGTCCTGGCC
GCCCTCACCA CCATCATCGC CACCCTGCTG GTCTCGCCGG CCGGAAAGGG CTACCTCACC
GTGTTCGGCT CGCTGTGGGA CGACTTCGTG TTCTGGCTGC GGAGTTGGTT TTCGTAG
|
|---|
| Protein sequence | MTHPPHRLRR RAQARQPDLP GLSGVARVDR RTKDLTKRLR AGEIALIDHV DLDGPAAEAL
LACKPAAVVN AAKSLSGRYP AMGLEILLSA GIPVVDEVGS AVLERIAEGD MVRLDGNVVL
CGSTPIAVGK AVELSEVVEA LAEARSTVSE QIEAFTANTM EYLRAERDLL FDGVGVPDIT
TQLDGRHVLM VVRGTHHKED LAVLRPYIRE YRPVCIGVDG GADALLEGGH RPDIIVGDMD
SVSDEALACG AELIVHAYPD GTAPGLDRVT ALGLPCVVFP AAGTSEDVAM LLADDKGASL
IVAVGGHSNL VEFLEKGRGG MASTFLTRLR VGGKLVDAKG VSRLYRSRIS TASLAALVLA
ALTTIIATLL VSPAGKGYLT VFGSLWDDFV FWLRSWFS
|
|---|
| |